Rh7DG457600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002162
Physical Location & Seq
Reverse (-)
65087767 .. 65088273
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG457600.1

Sequence Viewer

Length: 507 bp
ATGTGGAGCTGTGCTGTGGAGGGAGGCTCTTCTACTGGAGGCGGCGGTGAATCCACACTGGGCTTCCTTCTCCATGATGTCGCTGTGGTGGGTGACCCTATTACTGGGGAAGACGATGGAGCTATATCCATGGGTGAATGGGCACCGGCGCCGAGTTTTGGCTTTTTAATCAGTAGTCAAGTTCATGATCTAATACAATCTTGCACTTCTCAATACAAGGATGATGGTGGCTATGGTGTTCTCGCTGGCGGCAGCCTTGTTGGCTACGGCGGCAGTAGTGGGTTGGAGGCCACCAGGGTTGCAATTGTTCTCGGTGGCTTTGGGCTTTTGCTAGGGTTTCTCATAATTGGGCCTGTTGGGTTAGCGTGGGCTAGTTTAATTTGGGCTCATAGCATGATTAGGTTATTGTTTTTATTTTCGCTTTGGGTTATTATCATTTTTCAAGAAATGATGATGGCTCTATTATTTTCTTTTTTTGAGTGGGGAAGTTCGACAAGTAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

17.56

Weight (kDa)

4.26

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 142, 148
AciI CCGC 4 cut(s) 42, 45, 249, 270
AcyI GRCGYC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 104, 158
AgsI TTSAA 1 cut(s) 443
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 2 cut(s) 9, 122
AluI AGCT 2 cut(s) 9, 122
AoxI GGCC 2 cut(s) 288, 350
ApeKI GCWGC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 3 cut(s) 59, 104, 146
BaeGI GKGCMC 1 cut(s) 145
BanI GGYRCC 2 cut(s) 142, 148
BanII GRGCYC 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 264
BccI CCATC 3 cut(s) 110, 218, 448
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 295
BfaI CTAG 2 cut(s) 332, 372
BfoI RGCGCY 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 261
BisI GCNGC 4 cut(s) 43, 250, 253, 271
BlsI GCNGC 4 cut(s) 44, 251, 254, 272
Bme1390I CCNGG 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 144, 150
BmrFI CCNGG 1 cut(s) 295
BmrI ACTGGG 2 cut(s) 68, 114
BmuI ACTGGG 2 cut(s) 68, 114
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 129, 294
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 158
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 3 cut(s) 40, 63, 109
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 129, 294
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 104, 158
BseNI ACTGG 3 cut(s) 40, 63, 109
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 1 cut(s) 264
BshFI GGCC 2 cut(s) 290, 352
BshNI GGYRCC 2 cut(s) 142, 148
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 104, 158
BsnI GGCC 2 cut(s) 290, 352
Bsp1286I GDGCHC 2 cut(s) 145, 388
Bsp143I GATC 1 cut(s) 187
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 4 cut(s) 42, 45, 249, 270
BspANI GGCC 2 cut(s) 290, 352
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 144, 150
BspQI GCTCTTC 1 cut(s) 34
BspT107I GGYRCC 2 cut(s) 142, 148
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 3 cut(s) 40, 63, 109
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 2 cut(s) 129, 294
BssMI GATC 1 cut(s) 187
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 247
BstDSI CCRYGG 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 261, 270
BstNI CCWGG 1 cut(s) 295
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 293
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 290, 352
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 247
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 350
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 4 cut(s) 74, 130, 185, 394
DinI GGCGCC 1 cut(s) 150
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 388
Eco91I GGTNACC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 388
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 4 cut(s) 77, 133, 188, 397
FaiI YATR 8 cut(s) 75, 125, 131, 186, 234, 344, 390, 395
FatI CATG 4 cut(s) 73, 129, 184, 393
Fnu4HI GCNGC 4 cut(s) 43, 250, 253, 271
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 4 cut(s) 43, 250, 253, 271
FspBI CTAG 2 cut(s) 332, 372
GlaI GCGC 1 cut(s) 150
GluI GCNGC 4 cut(s) 43, 250, 253, 271
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 2 cut(s) 290, 352
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 4 cut(s) 77, 133, 188, 397
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 59, 104, 146
Hpy188III TCNNGA 2 cut(s) 185, 443
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 204, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 270
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 4 cut(s) 77, 133, 188, 397
HspAI GCGC 1 cut(s) 149
KasI GGCGCC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 187
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 6, 119
LpnPI CCDG 8 cut(s) 21, 44, 90, 159, 231, 280, 307, 366
Lsp1109I GCAGC 1 cut(s) 264
MaeI CTAG 2 cut(s) 332, 372
MaeIII GTNAC 2 cut(s) 92, 497
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 2 cut(s) 21, 122
MfeI CAATTG 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 145, 388
MluCI AATT 3 cut(s) 303, 345, 378
Mly113I GGCGCC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 13, 17, 32, 280
MseI TTAA 2 cut(s) 167, 377
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 295
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 261, 270
NarI GGCGCC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 129
NdeII GATC 1 cut(s) 187
NlaIII CATG 4 cut(s) 77, 133, 188, 397
NlaIV GGNNCC 2 cut(s) 144, 150
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 92
PagI TCATGA 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 4 cut(s) 44, 251, 254, 272
PluTI GGCGCC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 293
PspEI GGTNACC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 144, 150
PspPI GGNCC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 167, 377
SatI GCNGC 4 cut(s) 43, 250, 253, 271
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 2 cut(s) 145, 388
SetI ASST 3 cut(s) 11, 124, 404
SfoI GGCGCC 1 cut(s) 150
SgrAI CRCCGGYG 1 cut(s) 145
Sse9I AATT 3 cut(s) 303, 345, 378
SsiI CCGC 4 cut(s) 42, 45, 249, 270
SspDI GGCGCC 1 cut(s) 148
SspMI CTAG 2 cut(s) 332, 372
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 129
TaqI TCGA 1 cut(s) 491
TasI AATT 3 cut(s) 303, 345, 378
TauI GCSGC 3 cut(s) 45, 252, 273
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 167, 377
Tru9I TTAA 2 cut(s) 167, 377
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 63
XspI CTAG 2 cut(s) 332, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.