Rh7AG034700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002162
Physical Location & Seq
Forward (+)
2396286 .. 2400631
4346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG034700.1

Sequence Viewer

Length: 603 bp
ATGGCGGTTGTGGTCTCTTGCTCTTGGCTGTTTTTGCGGGATTGGGATCGGAAGCCCGATTTGGTGTTGGATTGTTTCAAAACCTGTGATCCTCAGATTGGGAGGATTGGGGAAGGGTTGAAGCGGCGGTCGGTTTGGTTGAAGACGTCTTGCGATAGTAAGCAGCCTGCCATTGGTGACAGGGACTGGTGGGATCCGGATTGGATGGATCTTTTTTCTCCATCCGATGGTGGTGACGGATCTTTCGAAGTGTTGGACGGTAGCGGTGCTGGTTTGGTGAATTGGTCATGGCACTCTTCTAGCGGAGGTGGAGACTGGTTGTGGTATTCTACTCTTGCCGGCAGCAATGATCATGAGTGCTATGACATGTTCTGGCCTGAGTTGACTTGTTTTGGAGGCTGGAGAGGTGGCTCTAGTTCCAGAAGCAGGTTGGGTGTTGATCATGGCGTTCAAGGTGGCGGCAGCGGTGATCAAGATGGCGGCGGCGGCGAAGGCACCCAAGTTGGCTGTAATTTTTCTAGGGTTTGTGTTGAATGGTTGTCTTGGGCCTGGATCTGGGCTTGGTTAGGAGTCCTTGTTTGGGTTTCCTATTCCTGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.16

Weight (kDa)

4.51

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 494
AccB7I CCANNNNNTGG 1 cut(s) 227
AccIII TCCGGA 1 cut(s) 196
AclWI GGATC 7 cut(s) 54, 83, 188, 201, 216, 247, 560
AcyI GRCGYC 1 cut(s) 146
AfiI CCNNNNNNNGG 7 cut(s) 98, 173, 227, 426, 555, 580, 594
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 5 cut(s) 79, 121, 142, 452, 533
AjnI CCWGG 2 cut(s) 548, 593
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
Alw26I GTCTC 2 cut(s) 19, 306
AlwI GGATC 7 cut(s) 54, 83, 188, 201, 216, 247, 560
AlwNI CAGNNNCTG 1 cut(s) 186
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 2 cut(s) 374, 546
ApeKI GCWGC 3 cut(s) 163, 342, 462
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspS9I GGNCC 1 cut(s) 546
AsuHPI GGTGA 4 cut(s) 188, 245, 289, 479
AsuII TTCGAA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 3 cut(s) 175, 354, 474
BccI CCATC 4 cut(s) 199, 221, 229, 470
BciT130I CCWGG 2 cut(s) 550, 595
BclI TGATCA 3 cut(s) 349, 439, 469
BcoDI GTCTC 2 cut(s) 19, 306
BfaI CTAG 3 cut(s) 300, 414, 519
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 8 cut(s) 125, 164, 343, 460, 463, 481, 484, 487
BlsI GCNGC 8 cut(s) 126, 165, 344, 461, 464, 482, 485, 488
Bme1390I CCNGG 2 cut(s) 550, 595
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 2 cut(s) 195, 496
BmrFI CCNGG 2 cut(s) 550, 595
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 421
Bpu14I TTCGAA 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 594
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 7 cut(s) 98, 173, 227, 426, 555, 580, 594
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 191, 320
Bse3DI GCAATG 1 cut(s) 352
Bse8I GATNNNNATC 1 cut(s) 45
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 2 cut(s) 550, 595
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 2 cut(s) 210, 221
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 7 cut(s) 98, 173, 227, 426, 555, 580, 594
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 2 cut(s) 107, 369
BseNI ACTGG 2 cut(s) 191, 320
BseXI GCAGC 3 cut(s) 175, 354, 474
Bsh1285I CGRYCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 376, 548
BshNI GGYRCC 1 cut(s) 494
BsiEI CGRYCG 1 cut(s) 131
BsiSI CCGG 2 cut(s) 197, 339
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 7 cut(s) 98, 173, 227, 426, 555, 580, 594
BsmAI GTCTC 2 cut(s) 19, 306
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 376, 548
Bso31I GGTCTC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 9 cut(s) 46, 88, 193, 208, 239, 349, 439, 469, 552
BspANI GGCC 2 cut(s) 376, 548
BspCNI CTCAG 2 cut(s) 106, 370
BspEI TCCGGA 1 cut(s) 196
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 195, 496
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 7 cut(s) 54, 83, 188, 201, 216, 247, 560
BspT104I TTCGAA 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 2 cut(s) 191, 320
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 594
BssMI GATC 9 cut(s) 46, 88, 193, 208, 239, 349, 439, 469, 552
BssNI GRCGYC 1 cut(s) 146
Bst2UI CCWGG 2 cut(s) 550, 595
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 168, 340
BstDEI CTNAG 3 cut(s) 93, 378, 600
BstF5I GGATG 2 cut(s) 210, 221
BstKTI GATC 9 cut(s) 49, 91, 196, 211, 242, 352, 442, 472, 555
BstMAI GTCTC 2 cut(s) 19, 306
BstMBI GATC 9 cut(s) 46, 88, 193, 208, 239, 349, 439, 469, 552
BstMCI CGRYCG 1 cut(s) 131
BstMWI GCNNNNNNNGC 3 cut(s) 34, 486, 492
BstNI CCWGG 2 cut(s) 550, 595
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 548, 593
BstV1I GCAGC 3 cut(s) 175, 354, 474
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 4 cut(s) 193, 208, 239, 552
BstYI RGATCY 4 cut(s) 193, 208, 239, 552
BsuRI GGCC 2 cut(s) 376, 548
BtsCI GGATG 2 cut(s) 210, 221
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 168, 340
CaiI CAGNNNCTG 1 cut(s) 186
CciI TCATGA 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 546
CviAII CATG 4 cut(s) 288, 353, 367, 443
DdeI CTNAG 3 cut(s) 93, 378, 600
DpnI GATC 9 cut(s) 48, 90, 195, 210, 241, 351, 441, 471, 554
DpnII GATC 9 cut(s) 46, 88, 193, 208, 239, 349, 439, 469, 552
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 548, 593
FaeI CATG 4 cut(s) 291, 356, 370, 446
FaiI YATR 5 cut(s) 289, 354, 363, 368, 444
FaqI GGGAC 1 cut(s) 197
FatI CATG 4 cut(s) 287, 352, 366, 442
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 3 cut(s) 349, 439, 469
Fnu4HI GCNGC 8 cut(s) 125, 164, 343, 460, 463, 481, 484, 487
FokI GGATG 2 cut(s) 208, 217
Fsp4HI GCNGC 8 cut(s) 125, 164, 343, 460, 463, 481, 484, 487
FspBI CTAG 3 cut(s) 300, 414, 519
GluI GCNGC 8 cut(s) 125, 164, 343, 460, 463, 481, 484, 487
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 2 cut(s) 376, 548
HapII CCGG 2 cut(s) 197, 339
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 4 cut(s) 291, 356, 370, 446
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 1 cut(s) 570
HpaII CCGG 2 cut(s) 197, 339
HphI GGTGA 4 cut(s) 188, 245, 289, 479
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 3 cut(s) 51, 96, 226
Hpy188III TCNNGA 4 cut(s) 197, 353, 420, 473
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 2 cut(s) 107, 485
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 486, 492
HpyF3I CTNAG 3 cut(s) 93, 378, 600
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 4 cut(s) 291, 356, 370, 446
Kpn2I TCCGGA 1 cut(s) 196
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 3 cut(s) 349, 439, 469
Kzo9I GATC 9 cut(s) 46, 88, 193, 208, 239, 349, 439, 469, 552
Lsp1109I GCAGC 3 cut(s) 175, 354, 474
MaeI CTAG 3 cut(s) 300, 414, 519
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 176, 233
MalI GATC 9 cut(s) 48, 90, 195, 210, 241, 351, 441, 471, 554
MboI GATC 9 cut(s) 46, 88, 193, 208, 239, 349, 439, 469, 552
MboII GAAGA 2 cut(s) 154, 288
MflI RGATCY 4 cut(s) 193, 208, 239, 552
MluCI AATT 2 cut(s) 280, 511
MlyI GAGTC 1 cut(s) 579
MmeI TCCRAC 2 cut(s) 48, 234
MnlI CCTC 5 cut(s) 96, 102, 299, 389, 398
MroI TCCGGA 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 465
MspI CCGG 2 cut(s) 197, 339
MspR9I CCNGG 2 cut(s) 550, 595
MvaI CCWGG 2 cut(s) 550, 595
MwoI GCNNNNNNNGC 3 cut(s) 34, 486, 492
NaeI GCCGGC 1 cut(s) 340
NdeII GATC 9 cut(s) 46, 88, 193, 208, 239, 349, 439, 469, 552
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 4 cut(s) 291, 356, 370, 446
NlaIV GGNNCC 2 cut(s) 195, 496
NmuCI GTSAC 2 cut(s) 176, 233
NspI RCATGY 1 cut(s) 370
NspV TTCGAA 1 cut(s) 246
PagI TCATGA 1 cut(s) 352
PciI ACATGT 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 8 cut(s) 126, 165, 344, 461, 464, 482, 485, 488
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
PscI ACATGT 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 548, 593
PspGI CCWGG 2 cut(s) 548, 593
PspN4I GGNNCC 2 cut(s) 195, 496
PspPI GGNCC 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 186
PsuI RGATCY 4 cut(s) 193, 208, 239, 552
SatI GCNGC 8 cut(s) 125, 164, 343, 460, 463, 481, 484, 487
Sau3AI GATC 9 cut(s) 46, 88, 193, 208, 239, 349, 439, 469, 552
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 1 cut(s) 579
ScrFI CCNGG 2 cut(s) 550, 595
SetI ASST 6 cut(s) 86, 149, 310, 409, 431, 457
SfuI TTCGAA 1 cut(s) 246
Sse9I AATT 2 cut(s) 280, 511
SspMI CTAG 3 cut(s) 300, 414, 519
StyD4I CCNGG 2 cut(s) 548, 593
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 280, 511
TauI GCSGC 5 cut(s) 127, 462, 483, 486, 489
TseFI GTSAC 2 cut(s) 176, 233
TseI GCWGC 3 cut(s) 163, 342, 462
Tsp45I GTSAC 2 cut(s) 176, 233
TspGWI ACGGA 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 227
XceI RCATGY 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XspI CTAG 3 cut(s) 300, 414, 519
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.