RchiOBHm_Chr7g0184531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002162
Physical Location & Seq
Reverse (-)
5032743 .. 5033589
847 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16465

Sequence Viewer

Length: 750 bp
ATGGGCGGGCATCCCTTACCTTCTGGTTGTATTGACGATGGCGGCGTAGGAGCAATCCTTCACCTTCTCGTCTCGACTCTCGCAAGGGAGATCTCTCGACGACGATCGACTTTAGTTGATGGTGGTCTTGTACCTTGGAATCAGAAGGGCGAGGGTGCTTTCCCTTCTACTCCTCTTCTAGGCGGCAGCTGTTATGGCAGCGCCGATGGTGATGGTGGTCATGCTTGTGTCTTCGGATCAAGATTAGAGGTGTGGAGTTGTGTTGTGGAGGGAGGCTCTCCTACTGGAGGCGGTGATGCATCCAAATCGGGCTTCCTTCTCCATGATGTCGCTGTGGTGGGTGATCCTGTTCCTGAGGAAGACGATGGAGCTACATGTTTGGATGACTGGGCGTCGGCGTCGGGTTTTGGCTTTTCGATCGGTGGTCAAGGTCTGGTCCCTTCCGAAGGCTATGATGGCTTTGATCTTATACGGTTGTGCACTTCTCCGTACAAGGATGATGGTGGCTATGGTGTTCTCACTAGCGGCAGCCTTGTTGGCTACAGCGGCGGTGGTGGGTTGGAGACCACCAGCAAGGTTCTTGGTGGCTTTGGGCTTTTGCTAGGGTTTCTCATAATTGGGCTTGTTGGGTTAGTGTGGGCTGGATTAACTTGGGCTCATGAAATGTTTAGGTTTATTGTTTTTATTTTAGCTTTGGGTTATTATCATTTTTCACGAAATGATGATGGCCTTATTATCTTCTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

25.65

Weight (kDa)

4.49

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 6, 42, 183, 291, 525, 546, 549
AclWI GGATC 2 cut(s) 244, 338
AcyI GRCGYC 2 cut(s) 392, 398
AfaI GTAC 2 cut(s) 132, 491
AfiI CCNNNNNNNGG 3 cut(s) 179, 287, 446
AflIII ACRYGT 1 cut(s) 374
AhdI GACNNNNNGTC 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 3 cut(s) 189, 371, 692
AluI AGCT 3 cut(s) 189, 371, 692
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 2 cut(s) 76, 557
Alw44I GTGCAC 1 cut(s) 478
AlwI GGATC 2 cut(s) 244, 338
AoxI GGCC 1 cut(s) 727
ApaLI GTGCAC 1 cut(s) 478
ApeKI GCWGC 3 cut(s) 186, 198, 528
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 436
AsuHPI GGTGA 4 cut(s) 53, 221, 305, 353
AvaII GGWCC 1 cut(s) 436
AxyI CCTNAGG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 658
BbsI GAAGAC 2 cut(s) 223, 366
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 198, 210, 540
BccI CCATC 8 cut(s) 32, 113, 200, 206, 359, 449, 494, 719
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BcoDI GTCTC 2 cut(s) 76, 557
BfaI CTAG 3 cut(s) 179, 522, 602
BfmI CTRYAG 1 cut(s) 541
BfoI RGCGCY 1 cut(s) 204
BglI GCCNNNNNGGC 1 cut(s) 537
BglII AGATCT 1 cut(s) 90
BisI GCNGC 7 cut(s) 43, 184, 187, 199, 526, 529, 547
BlsI GCNGC 7 cut(s) 44, 185, 188, 200, 527, 530, 548
Bme18I GGWCC 1 cut(s) 436
BmeRI GACNNNNNGTC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 438
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 3 cut(s) 19, 286, 308
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 2 cut(s) 223, 366
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 1 cut(s) 306
BsaHI GRCGYC 2 cut(s) 392, 398
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 287, 446
Bse1I ACTGG 2 cut(s) 289, 392
Bse21I CCTNAGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 4 cut(s) 10, 299, 388, 502
BseLI CCNNNNNNNGG 3 cut(s) 179, 287, 446
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 289, 392
BseRI GAGGAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 3 cut(s) 198, 210, 540
Bsh1285I CGRYCG 2 cut(s) 107, 420
BshFI GGCC 1 cut(s) 729
BsiEI CGRYCG 2 cut(s) 107, 420
BsiHKAI GWGCWC 1 cut(s) 482
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 3 cut(s) 179, 287, 446
BsmAI GTCTC 2 cut(s) 76, 557
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 1 cut(s) 729
Bso31I GGTCTC 1 cut(s) 557
Bsp1286I GDGCHC 2 cut(s) 482, 658
Bsp143I GATC 6 cut(s) 90, 104, 236, 343, 417, 463
BspACI CCGC 7 cut(s) 6, 42, 183, 291, 525, 546, 549
BspANI GGCC 1 cut(s) 729
BspCNI CTCAG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 2 cut(s) 244, 338
BspTNI GGTCTC 1 cut(s) 557
BsrI ACTGG 2 cut(s) 289, 392
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 6 cut(s) 90, 104, 236, 343, 417, 463
BssNI GRCGYC 2 cut(s) 392, 398
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 474
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 2 cut(s) 392, 398
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 354
BstENI CCTNNNNNAGG 3 cut(s) 177, 285, 444
BstF5I GGATG 4 cut(s) 10, 299, 388, 502
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 6 cut(s) 93, 107, 239, 346, 420, 466
BstMAI GTCTC 2 cut(s) 76, 557
BstMBI GATC 6 cut(s) 90, 104, 236, 343, 417, 463
BstMCI CGRYCG 2 cut(s) 107, 420
BstMWI GCNNNNNNNGC 4 cut(s) 195, 456, 537, 546
BstNSI RCATGY 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 541
BstSLI GKGCMC 1 cut(s) 482
BstV1I GCAGC 3 cut(s) 198, 210, 540
BstV2I GAAGAC 2 cut(s) 223, 366
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
Bsu36I CCTNAGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 729
BtsCI GGATG 4 cut(s) 10, 299, 388, 502
Cac8I GCNNGC 1 cut(s) 8
CciI TCATGA 1 cut(s) 658
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 436
CseI GACGC 2 cut(s) 381, 387
Csp6I GTAC 2 cut(s) 131, 490
CviAII CATG 4 cut(s) 221, 323, 375, 659
CviQI GTAC 2 cut(s) 131, 490
DdeI CTNAG 1 cut(s) 354
DpnI GATC 6 cut(s) 92, 106, 238, 345, 419, 465
DpnII GATC 6 cut(s) 90, 104, 236, 343, 417, 463
DriI GACNNNNNGTC 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 354
EcoNI CCTNNNNNAGG 3 cut(s) 177, 285, 444
EcoT14I CCWWGG 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 4 cut(s) 224, 326, 378, 662
FaiI YATR 9 cut(s) 195, 222, 324, 376, 453, 470, 510, 614, 660
FaqI GGGAC 1 cut(s) 422
FatI CATG 4 cut(s) 220, 322, 374, 658
Fnu4HI GCNGC 7 cut(s) 43, 184, 187, 199, 526, 529, 547
FokI GGATG 3 cut(s) 286, 395, 509
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 7 cut(s) 43, 184, 187, 199, 526, 529, 547
FspBI CTAG 3 cut(s) 179, 522, 602
GlaI GCGC 1 cut(s) 202
GluI GCNGC 7 cut(s) 43, 184, 187, 199, 526, 529, 547
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 729
HgaI GACGC 2 cut(s) 381, 387
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 2 cut(s) 392, 398
Hin1II CATG 4 cut(s) 224, 326, 378, 662
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 2 cut(s) 76, 139
HphI GGTGA 4 cut(s) 53, 221, 305, 353
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 3 cut(s) 144, 236, 445
Hpy188III TCNNGA 6 cut(s) 73, 96, 240, 353, 659, 714
Hpy8I GTNNAC 1 cut(s) 480
Hpy99I CGWCG 4 cut(s) 102, 105, 397, 403
HpyAV CCTTC 8 cut(s) 30, 68, 74, 139, 174, 326, 440, 450
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4V TGCA 2 cut(s) 299, 480
HpyF10VI GCNNNNNNNGC 4 cut(s) 195, 456, 537, 546
HpyF3I CTNAG 1 cut(s) 354
Hsp92I GRCGYC 2 cut(s) 392, 398
Hsp92II CATG 4 cut(s) 224, 326, 378, 662
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 6 cut(s) 90, 104, 236, 343, 417, 463
LmnI GCTCC 2 cut(s) 50, 368
LpnPI CCDG 8 cut(s) 9, 270, 360, 366, 373, 419, 583, 627
Lsp1109I GCAGC 3 cut(s) 198, 210, 540
LweI GCATC 3 cut(s) 19, 286, 308
MaeI CTAG 3 cut(s) 179, 522, 602
MalI GATC 6 cut(s) 92, 106, 238, 345, 419, 465
MboI GATC 6 cut(s) 90, 104, 236, 343, 417, 463
MboII GAAGA 4 cut(s) 167, 223, 371, 730
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 482, 658
MluCI AATT 1 cut(s) 615
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 7 cut(s) 145, 183, 241, 262, 266, 281, 349
Mph1103I ATGCAT 1 cut(s) 301
MseI TTAA 1 cut(s) 647
MslI CAYNNNNRTG 1 cut(s) 225
MspA1I CMGCKG 2 cut(s) 189, 546
MwoI GCNNNNNNNGC 4 cut(s) 195, 456, 537, 546
NdeII GATC 6 cut(s) 90, 104, 236, 343, 417, 463
NlaIII CATG 4 cut(s) 224, 326, 378, 662
NlaIV GGNNCC 1 cut(s) 438
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 1 cut(s) 378
PagI TCATGA 1 cut(s) 658
PciI ACATGT 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 7 cut(s) 44, 185, 188, 200, 527, 530, 548
Ple19I CGATCG 2 cut(s) 107, 420
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PscI ACATGT 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 436
PsuI RGATCY 1 cut(s) 90
PvuI CGATCG 2 cut(s) 107, 420
PvuII CAGCTG 1 cut(s) 189
RsaI GTAC 2 cut(s) 132, 491
RsaNI GTAC 2 cut(s) 131, 490
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 647
SatI GCNGC 7 cut(s) 43, 184, 187, 199, 526, 529, 547
Sau3AI GATC 6 cut(s) 90, 104, 236, 343, 417, 463
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 2 cut(s) 482, 658
SfaNI GCATC 3 cut(s) 19, 286, 308
SfcI CTRYAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 1 cut(s) 615
SsiI CCGC 7 cut(s) 6, 42, 183, 291, 525, 546, 549
SspMI CTAG 3 cut(s) 179, 522, 602
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 474
TaqI TCGA 4 cut(s) 74, 97, 107, 416
TasI AATT 1 cut(s) 615
TauI GCSGC 4 cut(s) 45, 186, 528, 549
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 647
Tru9I TTAA 1 cut(s) 647
TseI GCWGC 3 cut(s) 186, 198, 528
TspDTI ATGAA 1 cut(s) 675
TspGWI ACGGA 1 cut(s) 477
VneI GTGCAC 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 436
XagI CCTNNNNNAGG 3 cut(s) 177, 285, 444
XceI RCATGY 1 cut(s) 378
XspI CTAG 3 cut(s) 179, 522, 602
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.