Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

15582095 .. 15582905

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATAGAAAGTCTGGACTTTGGAACCCAAAAAGAATGTTTTTATCTCTATCCCTTGCTAAAGGGTTCTCTCGACGGCTGTCCTGCATCTGCGATAGAGGAGATTGGGAGGATTGGGGAAGGTTGAAGCGGGCGTCGGTTCGGTTGAAGTTGTCCGGAGATAGTAGGCAGTCTGCCATTGGTGACAGAGACTGGTGGGATCCAGATTGGATAGATCTTTTTTCTCCATCCGATGGTGGCGACGGACCTTTCGAGGTGTTGGACGGTAGTGGTGCTGGTTCGGTGAATTGGTCATGGCAATCTTTTAGCAGAGGTGGAGACTGGTCGTGGTATTCTACTCTTGATGGCAGCAATGATCATGAGTGCTGGGACAGGTTTTGGCCTGAGGTGGTGGCAGTGGTGATCAAGATGGCGGCGGCGGCGGCGGAGGCAGCCAAGTTGGCAGTAATTCTTCTAGGGCTTGTGTTGAATGGTTGTCTTGGGCCTGGGTCTAGGCTTGGTTGGGAGTCCTTGTTTGGGTTTCCTATTCCTGGGCTTGGTGGGCCTGCTGGGATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.37

Weight (kDa)

5.18

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	6 cut(s)	130, 413, 416, 419, 422, 425
AclWI	GGATC	2 cut(s)	194, 207
AcyI	GRCGYC	1 cut(s)	134
AfiI	CCNNNNNNNGG	4 cut(s)	233, 516, 530, 536
AgsI	TTSAA	3 cut(s)	127, 148, 469
AjnI	CCWGG	2 cut(s)	484, 529
Alw26I	GTCTC	2 cut(s)	183, 312
AlwI	GGATC	2 cut(s)	194, 207
AlwNI	CAGNNNCTG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	3 cut(s)	380, 482, 542
ApeKI	GCWGC	2 cut(s)	348, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspS9I	GGNCC	3 cut(s)	245, 482, 542
AsuHPI	GGTGA	3 cut(s)	194, 295, 412
AvaII	GGWCC	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	360, 443
BccI	CCATC	4 cut(s)	227, 235, 338, 403
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	486, 531
BclI	TGATCA	2 cut(s)	355, 402
BcoDI	GTCTC	2 cut(s)	183, 312
BfaI	CTAG	2 cut(s)	455, 492
BglI	GCCNNNNNGGC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	6 cut(s)	349, 414, 417, 420, 423, 432
BlsI	GCNGC	6 cut(s)	350, 415, 418, 421, 424, 433
Bme1390I	CCNGG	2 cut(s)	486, 531
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	245, 482, 542
BmiI	GGNNCC	2 cut(s)	26, 201
BmrFI	CCNGG	2 cut(s)	486, 531
BmsI	GCATC	1 cut(s)	96
BoxI	GACNNNNGTC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	485, 530
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 516, 530, 536
Bse1I	ACTGG	2 cut(s)	197, 326
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	486, 531
BseDI	CCNNGG	2 cut(s)	485, 530
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	4 cut(s)	233, 516, 530, 536
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	197, 326
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	360, 443
BseYI	CCCAGC	2 cut(s)	366, 548
BshFI	GGCC	3 cut(s)	382, 484, 544
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	4 cut(s)	233, 516, 530, 536
BsmAI	GTCTC	2 cut(s)	183, 312
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	382, 484, 544
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	199, 214, 355, 402
BspACI	CCGC	6 cut(s)	130, 413, 416, 419, 422, 425
BspANI	GGCC	3 cut(s)	382, 484, 544
BspCNI	CTCAG	1 cut(s)	376
BspEI	TCCGGA	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	26, 201
BspPI	GGATC	2 cut(s)	194, 207
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	197, 326
BssECI	CCNNGG	2 cut(s)	485, 530
BssMI	GATC	4 cut(s)	199, 214, 355, 402
BssNI	GRCGYC	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	486, 531
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	132, 546
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	4 cut(s)	202, 217, 358, 405
BstMAI	GTCTC	2 cut(s)	183, 312
BstMBI	GATC	4 cut(s)	199, 214, 355, 402
BstMWI	GCNNNNNNNGC	6 cut(s)	419, 422, 428, 431, 440, 541
BstNI	CCWGG	2 cut(s)	486, 531
BstPAI	GACNNNNGTC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	484, 529
BstV1I	GCAGC	2 cut(s)	360, 443
BstX2I	RGATCY	2 cut(s)	199, 214
BstYI	RGATCY	2 cut(s)	199, 214
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	3 cut(s)	382, 484, 544
BtsCI	GGATG	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	132, 546
CaiI	CAGNNNCTG	1 cut(s)	192
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	245, 482, 542
CseI	GACGC	1 cut(s)	123
CviAII	CATG	2 cut(s)	294, 359
CviJI	RGCY	8 cut(s)	79, 382, 434, 460, 484, 496, 535, 544
CviKI_1	RGCY	8 cut(s)	79, 382, 434, 460, 484, 496, 535, 544
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	4 cut(s)	201, 216, 357, 404
DpnII	GATC	4 cut(s)	199, 214, 355, 402
EciI	GGCGGA	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	484, 529
FaeI	CATG	2 cut(s)	297, 362
FaiI	YATR	2 cut(s)	295, 360
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	293, 358
FauI	CCCGC	1 cut(s)	123
FbaI	TGATCA	2 cut(s)	355, 402
Fnu4HI	GCNGC	6 cut(s)	349, 414, 417, 420, 423, 432
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	6 cut(s)	349, 414, 417, 420, 423, 432
FspBI	CTAG	2 cut(s)	455, 492
GluI	GCNGC	6 cut(s)	349, 414, 417, 420, 423, 432
GsaI	CCCAGC	2 cut(s)	370, 552
HaeIII	GGCC	3 cut(s)	382, 484, 544
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	297, 362
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	3 cut(s)	194, 295, 412
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	7 cut(s)	15, 72, 156, 203, 341, 359, 406
Hpy99I	CGWCG	3 cut(s)	78, 139, 245
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	6 cut(s)	419, 422, 428, 431, 440, 541
HpyF3I	CTNAG	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	297, 362
Kpn2I	TCCGGA	1 cut(s)	155
Ksp22I	TGATCA	2 cut(s)	355, 402
Kzo9I	GATC	4 cut(s)	199, 214, 355, 402
Lsp1109I	GCAGC	2 cut(s)	360, 443
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	2 cut(s)	455, 492
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	4 cut(s)	201, 216, 357, 404
MboI	GATC	4 cut(s)	199, 214, 355, 402
MboII	GAAGA	1 cut(s)	443
MflI	RGATCY	2 cut(s)	199, 214
MluCI	AATT	2 cut(s)	286, 447
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	92, 103, 247, 305, 379, 421
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	1 cut(s)	559
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	486, 531
MvaI	CCWGG	2 cut(s)	486, 531
MwoI	GCNNNNNNNGC	6 cut(s)	419, 422, 428, 431, 440, 541
NdeII	GATC	4 cut(s)	199, 214, 355, 402
NlaIII	CATG	2 cut(s)	297, 362
NlaIV	GGNNCC	2 cut(s)	26, 201
NmuCI	GTSAC	1 cut(s)	182
PagI	TCATGA	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	6 cut(s)	350, 415, 418, 421, 424, 433
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PshAI	GACNNNNGTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	484, 529
PspFI	CCCAGC	2 cut(s)	366, 548
PspGI	CCWGG	2 cut(s)	484, 529
PspN4I	GGNNCC	2 cut(s)	26, 201
PspPI	GGNCC	3 cut(s)	245, 482, 542
PstNI	CAGNNNCTG	1 cut(s)	192
PsuI	RGATCY	2 cut(s)	199, 214
SaqAI	TTAA	1 cut(s)	559
SatI	GCNGC	6 cut(s)	349, 414, 417, 420, 423, 432
Sau3AI	GATC	4 cut(s)	199, 214, 355, 402
Sau96I	GGNCC	3 cut(s)	245, 482, 542
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	486, 531
SetI	ASST	6 cut(s)	125, 250, 258, 316, 377, 390
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	245
Sse9I	AATT	2 cut(s)	286, 447
SsiI	CCGC	6 cut(s)	130, 413, 416, 419, 422, 425
SspMI	CTAG	2 cut(s)	455, 492
StyD4I	CCNGG	2 cut(s)	484, 529
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	73, 252
TasI	AATT	2 cut(s)	286, 447
TauI	GCSGC	4 cut(s)	416, 419, 422, 425
Tru1I	TTAA	1 cut(s)	559
Tru9I	TTAA	1 cut(s)	559
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	348, 431
Tsp45I	GTSAC	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	402
Van91I	CCANNNNNTGG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	245
XspI	CTAG	2 cut(s)	455, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.