Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Reverse (-)

36348955 .. 36362491

Gene Structure 13537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGCGGACATCCCTTCCCTTCTGGTTGCATTGACGATGGCGGCGTAGGAGCAATCCCTCACCTTCTCGTCTCGACTCTCGCAAGGGAGATCTCTCGACGGCAATCAACTTTAGTTGATGGTGGTCTTGTACCTTGGAATCGGAAGGGCGAGGGTGCTCTCCCTTCTACTCCTCTTCTCGGCGGCGACTGGTATGGCAGCGCTGATGGTGATGATGGTCGTTCTTGTGTCTTAGGGTCAAGATTCGAGGTGTGGAGCTGGGTTGTGGAGGGAGGCTCTTCTATTGGAGGCGGTGGTGCATCCAGACCGGGCTTCCTTCTCCATGATGTCGCTGTGGTGGGTGACCCGTTTCCTGAGGAAGACGATGGAGCTACATCCATGGATGAATGGGCGTCGGCGCTGGGTTTTGGTCTTTCGATCGGTGGTCAAGGTCTGGTCCCTTCCGGAGGCTATGATGGCTTTGCTCTGATACGGTCTTGTACTTATCCGTACAAGGACCATGGTGGCTATGGTGTTCTCGCTGGCGGCGGCCTTGCTGGCTACAGCGACGGTGGTGGGATGGAGGCCACTAGAAGGATTCTTGTATGTGAGTGTGGTGACAAGGTCAGACTCGTACTAGAGAGCTCAACTTTAATGGATAAGAGGGTCAAGAAGATGCTTAGATTTGATTTCGAAGTAGTAGAAAAGAACCTAGTGAATGACAAATTGAATGAACTACAAAAACAAAATGCTTCAGAAGAAGTTATTACTAGTACGATGAAAGATCTCGGCATTGAAAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

261

Amino Acids

27.46

Weight (kDa)

4.78

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	443
AciI	CCGC	6 cut(s)	6, 42, 183, 291, 525, 528
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	1 cut(s)	392
AfaI	GTAC	5 cut(s)	132, 481, 491, 615, 754
AfeI	AGCGCT	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	179, 446, 573
AgsI	TTSAA	2 cut(s)	709, 776
AhlI	ACTAGT	1 cut(s)	749
AluBI	AGCT	3 cut(s)	258, 371, 624
AluI	AGCT	3 cut(s)	258, 371, 624
Alw21I	GWGCWC	2 cut(s)	160, 626
Alw26I	GTCTC	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	202
AoxI	GGCC	2 cut(s)	529, 564
ApeKI	GCWGC	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	203, 400
AspS9I	GGNCC	2 cut(s)	436, 496
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	4 cut(s)	53, 221, 353, 608
AsuII	TTCGAA	1 cut(s)	672
AvaII	GGWCC	2 cut(s)	436, 496
AxyI	CCTNAGG	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	2 cut(s)	160, 626
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	7 cut(s)	32, 113, 200, 209, 359, 449, 553
BceAI	ACGGC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	76
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	4 cut(s)	570, 617, 692, 750
BfmI	CTRYAG	1 cut(s)	541
BfoI	RGCGCY	2 cut(s)	204, 401
BglI	GCCNNNNNGGC	1 cut(s)	537
BglII	AGATCT	2 cut(s)	90, 763
BisI	GCNGC	5 cut(s)	43, 184, 199, 526, 529
BlsI	GCNGC	5 cut(s)	44, 185, 200, 527, 530
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	436, 496
BmgT120I	GGNCC	2 cut(s)	436, 496
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	308, 645
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
Bpu14I	TTCGAA	1 cut(s)	672
BpuMI	CCSGG	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	134, 378, 499
BsaWI	WCCGGW	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 446, 573
Bse1I	ACTGG	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	134, 378, 499
BseGI	GGATG	5 cut(s)	10, 299, 374, 388, 564
BseLI	CCNNNNNNNGG	3 cut(s)	179, 446, 573
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	210
BseYI	CCCAGC	2 cut(s)	258, 400
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	531, 566
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	2 cut(s)	160, 626
BsiSI	CCGG	2 cut(s)	308, 444
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	179, 446, 573
BsmAI	GTCTC	1 cut(s)	76
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	531, 566
Bsp119I	TTCGAA	1 cut(s)	672
Bsp1286I	GDGCHC	2 cut(s)	160, 626
Bsp13I	TCCGGA	1 cut(s)	443
Bsp143I	GATC	3 cut(s)	90, 417, 763
Bsp19I	CCATGG	2 cut(s)	378, 499
BspACI	CCGC	6 cut(s)	6, 42, 183, 291, 525, 528
BspANI	GGCC	2 cut(s)	531, 566
BspCNI	CTCAG	1 cut(s)	346
BspEI	TCCGGA	1 cut(s)	443
BspLI	GGNNCC	1 cut(s)	438
BspQI	GCTCTTC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	134, 378, 499
BssMI	GATC	3 cut(s)	90, 417, 763
BssNI	GRCGYC	1 cut(s)	392
BssT1I	CCWWGG	3 cut(s)	134, 378, 499
Bst4CI	ACNGT	2 cut(s)	474, 551
Bst6I	CTCTTC	2 cut(s)	180, 283
BstACI	GRCGYC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	672
BstC8I	GCNNGC	2 cut(s)	523, 538
BstDEI	CTNAG	4 cut(s)	232, 354, 659, 783
BstDSI	CCRYGG	2 cut(s)	378, 499
BstEII	GGTNACC	1 cut(s)	341
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstF5I	GGATG	5 cut(s)	10, 299, 374, 388, 564
BstH2I	RGCGCY	2 cut(s)	204, 401
BstHHI	GCGC	2 cut(s)	203, 400
BstKTI	GATC	3 cut(s)	93, 420, 766
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	90, 417, 763
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	2 cut(s)	456, 537
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	2 cut(s)	90, 763
BstYI	RGATCY	2 cut(s)	90, 763
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	531, 566
BtgI	CCRYGG	2 cut(s)	378, 499
BtsCI	GGATG	5 cut(s)	10, 299, 374, 388, 564
Cac8I	GCNNGC	2 cut(s)	523, 538
CfoI	GCGC	2 cut(s)	203, 400
Cfr13I	GGNCC	2 cut(s)	436, 496
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	5 cut(s)	131, 480, 490, 614, 753
CviAII	CATG	3 cut(s)	323, 379, 500
CviQI	GTAC	5 cut(s)	131, 480, 490, 614, 753
DdeI	CTNAG	4 cut(s)	232, 354, 659, 783
DpnI	GATC	3 cut(s)	92, 419, 765
DpnII	GATC	3 cut(s)	90, 417, 763
Eam1104I	CTCTTC	2 cut(s)	180, 283
EarI	CTCTTC	2 cut(s)	180, 283
EciI	GGCGGA	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	624
Eco130I	CCWWGG	3 cut(s)	134, 378, 499
Eco24I	GRGCYC	1 cut(s)	626
Eco47I	GGWCC	2 cut(s)	436, 496
Eco47III	AGCGCT	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	717
Eco81I	CCTNAGG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	624
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoO65I	GGTNACC	1 cut(s)	341
EcoT14I	CCWWGG	3 cut(s)	134, 378, 499
EcoT38I	GRGCYC	1 cut(s)	626
ErhI	CCWWGG	3 cut(s)	134, 378, 499
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	3 cut(s)	326, 382, 503
FaiI	YATR	7 cut(s)	195, 324, 380, 453, 501, 510, 586
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	3 cut(s)	322, 378, 499
Fnu4HI	GCNGC	5 cut(s)	43, 184, 199, 526, 529
FokI	GGATG	4 cut(s)	286, 361, 395, 571
FriOI	GRGCYC	1 cut(s)	626
Fsp4HI	GCNGC	5 cut(s)	43, 184, 199, 526, 529
FspBI	CTAG	4 cut(s)	570, 617, 692, 750
GlaI	GCGC	2 cut(s)	202, 399
GluI	GCNGC	5 cut(s)	43, 184, 199, 526, 529
GsaI	CCCAGC	2 cut(s)	262, 404
HaeII	RGCGCY	2 cut(s)	204, 401
HaeIII	GGCC	2 cut(s)	531, 566
HapII	CCGG	2 cut(s)	308, 444
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	203, 400
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	326, 382, 503
Hin6I	GCGC	2 cut(s)	201, 398
HinP1I	GCGC	2 cut(s)	201, 398
HinfI	GANTC	5 cut(s)	76, 139, 243, 577, 609
HpaII	CCGG	2 cut(s)	308, 444
HphI	GGTGA	4 cut(s)	53, 221, 353, 608
Hpy188I	TCNGA	4 cut(s)	144, 468, 608, 736
Hpy188III	TCNNGA	7 cut(s)	73, 96, 240, 303, 353, 444, 649
Hpy99I	CGWCG	3 cut(s)	102, 397, 551
HpyAV	CCTTC	8 cut(s)	25, 30, 74, 139, 174, 326, 450, 567
HpyCH4III	ACNGT	2 cut(s)	474, 551
HpyCH4V	TGCA	2 cut(s)	30, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	456, 537
HpyF3I	CTNAG	4 cut(s)	232, 354, 659, 783
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	3 cut(s)	326, 382, 503
HspAI	GCGC	2 cut(s)	201, 398
Kpn2I	TCCGGA	1 cut(s)	443
Kzo9I	GATC	3 cut(s)	90, 417, 763
LguI	GCTCTTC	1 cut(s)	283
LmnI	GCTCC	3 cut(s)	50, 255, 368
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	2 cut(s)	308, 645
MaeI	CTAG	4 cut(s)	570, 617, 692, 750
MaeIII	GTNAC	2 cut(s)	341, 596
MalI	GATC	3 cut(s)	92, 419, 765
MboI	GATC	3 cut(s)	90, 417, 763
MboII	GAAGA	5 cut(s)	167, 270, 371, 664, 749
MflI	RGATCY	2 cut(s)	90, 763
MhlI	GDGCHC	2 cut(s)	160, 626
MluCI	AATT	1 cut(s)	704
MlyI	GAGTC	2 cut(s)	70, 603
MroI	TCCGGA	1 cut(s)	443
MseI	TTAA	1 cut(s)	632
MspI	CCGG	2 cut(s)	308, 444
MspR9I	CCNGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	456, 537
NciI	CCSGG	1 cut(s)	309
NcoI	CCATGG	2 cut(s)	378, 499
NdeII	GATC	3 cut(s)	90, 417, 763
NlaIII	CATG	3 cut(s)	326, 382, 503
NlaIV	GGNNCC	1 cut(s)	438
NmeAIII	GCCGAG	2 cut(s)	159, 747
NmuCI	GTSAC	2 cut(s)	341, 596
NspV	TTCGAA	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	139, 243, 577
PflFI	GACNNNGTC	1 cut(s)	602
PkrI	GCNGC	5 cut(s)	44, 185, 200, 527, 530
Ple19I	CGATCG	1 cut(s)	420
PleI	GAGTC	2 cut(s)	70, 603
PpsI	GAGTC	2 cut(s)	70, 603
Psp124BI	GAGCTC	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	341
PspFI	CCCAGC	2 cut(s)	258, 400
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	436, 496
PsuI	RGATCY	2 cut(s)	90, 763
PsyI	GACNNNGTC	1 cut(s)	602
PvuI	CGATCG	1 cut(s)	420
RsaI	GTAC	5 cut(s)	132, 481, 491, 615, 754
RsaNI	GTAC	5 cut(s)	131, 480, 490, 614, 753
SacI	GAGCTC	1 cut(s)	626
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	5 cut(s)	43, 184, 199, 526, 529
Sau3AI	GATC	3 cut(s)	90, 417, 763
Sau96I	GGNCC	2 cut(s)	436, 496
SchI	GAGTC	2 cut(s)	70, 603
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	160, 626
SfaNI	GCATC	2 cut(s)	308, 645
SfcI	CTRYAG	1 cut(s)	541
SfuI	TTCGAA	1 cut(s)	672
SinI	GGWCC	2 cut(s)	436, 496
SpeI	ACTAGT	1 cut(s)	749
Sse9I	AATT	1 cut(s)	704
SsiI	CCGC	6 cut(s)	6, 42, 183, 291, 525, 528
SspMI	CTAG	4 cut(s)	570, 617, 692, 750
SstI	GAGCTC	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	3 cut(s)	134, 378, 499
TaaI	ACNGT	2 cut(s)	474, 551
TaqI	TCGA	5 cut(s)	74, 97, 246, 416, 672
TasI	AATT	1 cut(s)	704
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	4 cut(s)	45, 186, 528, 531
TfiI	GAWTC	3 cut(s)	139, 243, 577
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TseFI	GTSAC	2 cut(s)	341, 596
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	2 cut(s)	341, 596
TspDTI	ATGAA	3 cut(s)	399, 726, 773
TspGWI	ACGGA	1 cut(s)	477
Tth111I	GACNNNGTC	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	436, 496
XagI	CCTNNNNNAGG	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XspI	CTAG	4 cut(s)	570, 617, 692, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.