Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Reverse (-)

65800165 .. 65806071

Gene Structure 5907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG489100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGTGGGCATCCCGTCCATTCTAGTTGCATTGACGATGGCAGCAAGGGGGACAACGCTCTCCCTTCTACTCCCCTTCTCGGAGGCGGCTGGCATGGCAGCACCGATGGTGATGATGGTCGTTCTTGTGCCTTCGGGTCAAGATTAGAGATGTGGAGCTGTGCTGTGGAGGGAGGCTCTTCTACTGGAGGCGGCGGTGAATCCACACTGGGCTTCCTTCTCCATGATGTCGCTGTGGTGGGTGACCCTATTACTGGGGAAGACGATGGAGCTATATCCATGGGTGAATGGGCACCGGCGCCGAGTTTTGGCTTTTTAATCAGTAGTCAAGTTCATGATCTAATACAATCTTGCACTTCTCAATACAAGGATGATGGTGGCTATGGTGTTCTCGCTGGCGGCAGCCTTGTTGGCTACGGCGGCAGTAGTGGGTTGGAGGCCACCAGGGTTGCAATTGTTCTCGTAGCACTTTTGACAGAATCTTCCTCCTGCTCTGATTCTGTTCAACATAGCTATGAGAAATGGTTGCTGCAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

18.16

Weight (kDa)

4.28

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	292, 298
AciI	CCGC	5 cut(s)	87, 192, 195, 399, 420
AcyI	GRCGYC	1 cut(s)	299
AfiI	CCNNNNNNNGG	3 cut(s)	80, 254, 308
AgsI	TTSAA	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	4 cut(s)	159, 272, 513, 535
AluI	AGCT	4 cut(s)	159, 272, 513, 535
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	5 cut(s)	42, 99, 402, 529, 532
AspLEI	GCGC	1 cut(s)	301
AsuHPI	GGTGA	4 cut(s)	122, 209, 254, 296
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	2 cut(s)	292, 298
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	54, 111, 414, 516
BccI	CCATC	5 cut(s)	32, 101, 110, 260, 368
BceAI	ACGGC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	445
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	411
BisI	GCNGC	9 cut(s)	43, 88, 100, 193, 400, 403, 421, 530, 533
BlsI	GCNGC	9 cut(s)	44, 89, 101, 194, 401, 404, 422, 531, 534
Bme1390I	CCNGG	1 cut(s)	445
BmiI	GGNNCC	2 cut(s)	294, 300
BmrFI	CCNGG	1 cut(s)	445
BmrI	ACTGGG	2 cut(s)	218, 264
BmsI	GCATC	1 cut(s)	19
BmuI	ACTGGG	2 cut(s)	218, 264
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpmI	CTGGAG	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	279, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 254, 308
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	3 cut(s)	190, 213, 259
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	279, 444
BseGI	GGATG	2 cut(s)	10, 376
BseLI	CCNNNNNNNGG	3 cut(s)	80, 254, 308
BseNI	ACTGG	3 cut(s)	190, 213, 259
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	4 cut(s)	54, 111, 414, 516
BshFI	GGCC	1 cut(s)	440
BshNI	GGYRCC	2 cut(s)	292, 298
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	80, 254, 308
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	5 cut(s)	87, 192, 195, 399, 420
BspANI	GGCC	1 cut(s)	440
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	294, 300
BspMAI	CTGCAG	1 cut(s)	534
BspQI	GCTCTTC	1 cut(s)	184
BspT107I	GGYRCC	2 cut(s)	292, 298
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	190, 213, 259
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	279, 444
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	184
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	92, 397
BstDSI	CCRYGG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	10, 376
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 411, 420
BstNI	CCWGG	1 cut(s)	445
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	4 cut(s)	54, 111, 414, 516
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	10, 376
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	92, 397
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	295
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	4 cut(s)	95, 224, 280, 335
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	279
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	4 cut(s)	98, 227, 283, 338
FaiI	YATR	8 cut(s)	96, 225, 275, 281, 336, 384, 510, 516
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	4 cut(s)	94, 223, 279, 334
Fnu4HI	GCNGC	9 cut(s)	43, 88, 100, 193, 400, 403, 421, 530, 533
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	9 cut(s)	43, 88, 100, 193, 400, 403, 421, 530, 533
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	9 cut(s)	43, 88, 100, 193, 400, 403, 421, 530, 533
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	98, 227, 283, 338
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	3 cut(s)	200, 479, 497
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	4 cut(s)	122, 209, 254, 296
Hpy188I	TCNGA	2 cut(s)	83, 496
Hpy188III	TCNNGA	2 cut(s)	141, 335
HpyAV	CCTTC	4 cut(s)	75, 86, 142, 227
HpyCH4V	TGCA	4 cut(s)	30, 354, 452, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 411, 420
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	98, 227, 283, 338
HspAI	GCGC	1 cut(s)	299
KasI	GGCGCC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	156, 269
LpnPI	CCDG	9 cut(s)	76, 171, 194, 240, 309, 381, 430, 457, 502
Lsp1109I	GCAGC	4 cut(s)	54, 111, 414, 516
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	171, 272, 474
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	453
Mly113I	GGCGCC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	6 cut(s)	77, 163, 167, 182, 430, 496
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	445
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	445
MwoI	GCNNNNNNNGC	3 cut(s)	96, 411, 420
NarI	GGCGCC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	4 cut(s)	98, 227, 283, 338
NlaIV	GGNNCC	2 cut(s)	294, 300
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	200, 479, 497
PkrI	GCNGC	9 cut(s)	44, 89, 101, 194, 401, 404, 422, 531, 534
PluTI	GGCGCC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	443
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	294, 300
PstI	CTGCAG	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	9 cut(s)	43, 88, 100, 193, 400, 403, 421, 530, 533
Sau3AI	GATC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	4 cut(s)	161, 274, 515, 537
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	530
SfoI	GGCGCC	1 cut(s)	300
SgrAI	CRCCGGYG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	513
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	5 cut(s)	87, 192, 195, 399, 420
SspDI	GGCGCC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	279
TasI	AATT	1 cut(s)	453
TauI	GCSGC	4 cut(s)	90, 195, 402, 423
TfiI	GAWTC	3 cut(s)	200, 479, 497
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	5 cut(s)	42, 99, 402, 529, 532
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	213
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.