Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Reverse (-)

32056240 .. 32056720

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCCGACGATAGTGGGCGGCCCGCCATTGGTGAAGGGGACCGGTGGGATCCGAATTGGATGGATCTCTTTTATCCATCCGATGGTGGTGACGGATCTTTCGATGTGTTGGACGGCAGCGGTGCTGGTTTGGTGAATTGGTCATGCAATCTTCTAGCGGAGGTGGAGACCGGTCGTGAGGCTAGAGAGGAGGCTCTAGTTCCGGAAGCGGGTTGGGTGTTGATCATGGCGTTCGAGGTGGCGGCAGCGGTGATCAAGATAGCGGCGGCAACAGAGGCGACCAAGTTGGCAGTAATTCTTCTAAGGCTTGGTGGGCATGTTGGGGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.56

Weight (kDa)

4.17

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	9 cut(s)	19, 24, 120, 158, 209, 242, 248, 263, 266
AclWI	GGATC	4 cut(s)	44, 57, 72, 103
AfiI	CCNNNNNNNGG	3 cut(s)	29, 83, 209
AgeI	ACCGGT	2 cut(s)	42, 170
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	4 cut(s)	44, 57, 72, 103
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	117, 245
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AsiGI	ACCGGT	2 cut(s)	42, 170
AspS9I	GGNCC	2 cut(s)	21, 40
AsuHPI	GGTGA	4 cut(s)	44, 101, 145, 262
AvaII	GGWCC	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	129, 257
BccI	CCATC	3 cut(s)	55, 77, 85
BceAI	ACGGC	1 cut(s)	130
BclI	TGATCA	2 cut(s)	222, 252
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	3 cut(s)	155, 183, 197
BisI	GCNGC	6 cut(s)	20, 118, 243, 246, 264, 267
BlsI	GCNGC	6 cut(s)	21, 119, 244, 247, 265, 268
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	21, 40
BmiI	GGNNCC	2 cut(s)	41, 51
BsaI	GGTCTC	1 cut(s)	161
BsaWI	WCCGGW	3 cut(s)	42, 170, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 83, 209
Bse118I	RCCGGY	2 cut(s)	42, 170
BseAI	TCCGGA	1 cut(s)	202
BseGI	GGATG	2 cut(s)	66, 77
BseLI	CCNNNNNNNGG	3 cut(s)	29, 83, 209
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	129, 257
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	22
BshTI	ACCGGT	2 cut(s)	42, 170
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	43, 171, 203
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	29, 83, 209
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	161
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	5 cut(s)	49, 64, 95, 222, 252
BspACI	CCGC	9 cut(s)	19, 24, 120, 158, 209, 242, 248, 263, 266
BspANI	GGCC	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	41, 51
BspPI	GGATC	4 cut(s)	44, 57, 72, 103
BspTNI	GGTCTC	1 cut(s)	161
BsrFI	RCCGGY	2 cut(s)	42, 170
BssAI	RCCGGY	2 cut(s)	42, 170
BssMI	GATC	5 cut(s)	49, 64, 95, 222, 252
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	66, 77
BstKTI	GATC	5 cut(s)	52, 67, 98, 225, 255
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	5 cut(s)	49, 64, 95, 222, 252
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 313
BstNSI	RCATGY	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	129, 257
BstX2I	RGATCY	3 cut(s)	49, 64, 95
BstYI	RGATCY	3 cut(s)	49, 64, 95
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	66, 77
Cac8I	GCNNGC	1 cut(s)	24
Cfr10I	RCCGGY	2 cut(s)	42, 170
Cfr13I	GGNCC	2 cut(s)	21, 40
CspAI	ACCGGT	2 cut(s)	42, 170
CviAII	CATG	3 cut(s)	144, 226, 317
CviJI	RGCY	4 cut(s)	22, 182, 194, 307
CviKI_1	RGCY	4 cut(s)	22, 182, 194, 307
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	5 cut(s)	51, 66, 97, 224, 254
DpnII	GATC	5 cut(s)	49, 64, 95, 222, 252
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	40
FaeI	CATG	3 cut(s)	147, 229, 320
FaiI	YATR	3 cut(s)	145, 227, 318
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	143, 225, 316
FauI	CCCGC	2 cut(s)	31, 202
FbaI	TGATCA	2 cut(s)	222, 252
Fnu4HI	GCNGC	6 cut(s)	20, 118, 243, 246, 264, 267
FokI	GGATG	2 cut(s)	64, 73
Fsp4HI	GCNGC	6 cut(s)	20, 118, 243, 246, 264, 267
FspBI	CTAG	3 cut(s)	155, 183, 197
GluI	GCNGC	6 cut(s)	20, 118, 243, 246, 264, 267
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	3 cut(s)	43, 171, 203
Hin1II	CATG	3 cut(s)	147, 229, 320
HpaII	CCGG	3 cut(s)	43, 171, 203
HphI	GGTGA	4 cut(s)	44, 101, 145, 262
Hpy188I	TCNGA	3 cut(s)	7, 54, 82
Hpy188III	TCNNGA	3 cut(s)	176, 203, 256
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 313
HpyF3I	CTNAG	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	147, 229, 320
Kpn2I	TCCGGA	1 cut(s)	202
Ksp22I	TGATCA	2 cut(s)	222, 252
Kzo9I	GATC	5 cut(s)	49, 64, 95, 222, 252
LpnPI	CCDG	4 cut(s)	56, 111, 184, 216
Lsp1109I	GCAGC	2 cut(s)	129, 257
MaeI	CTAG	3 cut(s)	155, 183, 197
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	5 cut(s)	51, 66, 97, 224, 254
MboI	GATC	5 cut(s)	49, 64, 95, 222, 252
MboII	GAAGA	2 cut(s)	143, 290
MflI	RGATCY	3 cut(s)	49, 64, 95
MluCI	AATT	3 cut(s)	55, 136, 294
MmeI	TCCRAC	2 cut(s)	30, 90
MnlI	CCTC	6 cut(s)	154, 172, 181, 184, 229, 268
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	1 cut(s)	331
MspA1I	CMGCKG	2 cut(s)	120, 248
MspI	CCGG	3 cut(s)	43, 171, 203
MwoI	GCNNNNNNNGC	2 cut(s)	275, 313
NdeII	GATC	5 cut(s)	49, 64, 95, 222, 252
NlaIII	CATG	3 cut(s)	147, 229, 320
NlaIV	GGNNCC	2 cut(s)	41, 51
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	83
PinAI	ACCGGT	2 cut(s)	42, 170
PkrI	GCNGC	6 cut(s)	21, 119, 244, 247, 265, 268
PspN4I	GGNNCC	2 cut(s)	41, 51
PspPI	GGNCC	2 cut(s)	21, 40
PsuI	RGATCY	3 cut(s)	49, 64, 95
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	6 cut(s)	20, 118, 243, 246, 264, 267
Sau3AI	GATC	5 cut(s)	49, 64, 95, 222, 252
Sau96I	GGNCC	2 cut(s)	21, 40
SetI	ASST	2 cut(s)	165, 240
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	3 cut(s)	55, 136, 294
SsiI	CCGC	9 cut(s)	19, 24, 120, 158, 209, 242, 248, 263, 266
SspMI	CTAG	3 cut(s)	155, 183, 197
TaqI	TCGA	2 cut(s)	102, 234
TasI	AATT	3 cut(s)	55, 136, 294
TauI	GCSGC	4 cut(s)	22, 245, 266, 269
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	2 cut(s)	117, 245
Tsp45I	GTSAC	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	108
Van91I	CCANNNNNTGG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	3 cut(s)	155, 183, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.