Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Reverse (-)

55332109 .. 55332563

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAGGCTGATCTGGTCTTGGATCGGCTTCAGATTGGTTTTGTTTGGTTGTCTGATGATGACCGCGGAAACTGGTCGTGGTATGCTACTCGTGACGGCGACAATGTTCACGAGTGCTGGGACATGTTTTGGAAGCTGGAGTTGGAAGCTGGAGTTGCAGCTCTAGTTCCAGTCGTAAGTTTGGTGTTGATCACGGCTTTCGAGGTGGCGATAGTGGTGATCAAGATGGTGGTGGCAGCGGAGACAACCCAGTTGGCAGTAACTCTTCTAGGATTTGTGTTGAATGGTTGTCTTGGGCCTGGGTTTGGTCTTGGTTGGGAGTCCTATTTGGGCTTCTCATTCTTGGGCTTGGTGGGCCTGCTGGGCTTGTTTAATTTTGGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.09

Weight (kDa)

4.24

Isoelectric Point (pI)

20.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	66
AciI	CCGC	3 cut(s)	64, 66, 239
AclWI	GGATC	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	136, 149, 161
AluI	AGCT	3 cut(s)	136, 149, 161
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	296, 355
ApeKI	GCWGC	2 cut(s)	158, 236
AspS9I	GGNCC	2 cut(s)	296, 355
AsuHPI	GGTGA	1 cut(s)	229
BauI	CACGAG	2 cut(s)	90, 110
BbvI	GCAGC	2 cut(s)	170, 248
BccI	CCATC	2 cut(s)	220, 375
BceAI	ACGGC	2 cut(s)	112, 210
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	2 cut(s)	189, 219
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	164, 269
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	2 cut(s)	159, 237
BlsI	GCNGC	2 cut(s)	160, 238
Bme1390I	CCNGG	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	296, 355
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	244
BpmI	CTGGAG	2 cut(s)	158, 171
BsaJI	CCNNGG	2 cut(s)	64, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	77, 170, 250
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	64, 299
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseNI	ACTGG	3 cut(s)	77, 170, 250
BseXI	GCAGC	2 cut(s)	170, 248
BseYI	CCCAGC	2 cut(s)	117, 361
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	298, 357
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	298, 357
Bsp143I	GATC	4 cut(s)	10, 22, 189, 219
BspACI	CCGC	3 cut(s)	64, 66, 239
BspANI	GGCC	2 cut(s)	298, 357
BspFNI	CGCG	1 cut(s)	66
BspPI	GGATC	1 cut(s)	30
BsrI	ACTGG	3 cut(s)	77, 170, 250
BssECI	CCNNGG	2 cut(s)	64, 299
BssMI	GATC	4 cut(s)	10, 22, 189, 219
BssSI	CACGAG	2 cut(s)	90, 110
Bst2BI	CACGAG	2 cut(s)	90, 110
Bst2UI	CCWGG	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	386
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	13, 25, 192, 222
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	4 cut(s)	10, 22, 189, 219
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 354, 363
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	298
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	170, 248
BsuRI	GGCC	2 cut(s)	298, 357
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	296, 355
Cfr42I	CCGCGG	1 cut(s)	67
CviAII	CATG	1 cut(s)	124
DpnI	GATC	4 cut(s)	12, 24, 191, 221
DpnII	GATC	4 cut(s)	10, 22, 189, 219
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	127
FaiI	YATR	2 cut(s)	84, 125
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	123
FbaI	TGATCA	2 cut(s)	189, 219
Fnu4HI	GCNGC	2 cut(s)	159, 237
Fsp4HI	GCNGC	2 cut(s)	159, 237
FspBI	CTAG	2 cut(s)	164, 269
GluI	GCNGC	2 cut(s)	159, 237
GsaI	CCCAGC	2 cut(s)	121, 365
GsuI	CTGGAG	2 cut(s)	158, 171
HaeIII	GGCC	2 cut(s)	298, 357
Hin1II	CATG	1 cut(s)	127
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	33, 55
Hpy188III	TCNNGA	3 cut(s)	92, 110, 223
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 354, 363
Hsp92II	CATG	1 cut(s)	127
Ksp22I	TGATCA	2 cut(s)	189, 219
KspI	CCGCGG	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	10, 22, 189, 219
Lsp1109I	GCAGC	2 cut(s)	170, 248
MaeI	CTAG	2 cut(s)	164, 269
MaeIII	GTNAC	2 cut(s)	92, 259
MalI	GATC	4 cut(s)	12, 24, 191, 221
MboI	GATC	4 cut(s)	10, 22, 189, 219
MboII	GAAGA	1 cut(s)	257
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	1 cut(s)	196
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	2 cut(s)	66, 239
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	155, 354, 363
NdeII	GATC	4 cut(s)	10, 22, 189, 219
NlaIII	CATG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	127
PciI	ACATGT	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	160, 238
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	2 cut(s)	117, 361
PspGI	CCWGG	1 cut(s)	298
PspPI	GGNCC	2 cut(s)	296, 355
SacII	CCGCGG	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	159, 237
Sau3AI	GATC	4 cut(s)	10, 22, 189, 219
Sau96I	GGNCC	2 cut(s)	296, 355
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	4 cut(s)	138, 151, 163, 207
Sfr303I	CCGCGG	1 cut(s)	67
SgrBI	CCGCGG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	3 cut(s)	64, 66, 239
SspMI	CTAG	2 cut(s)	164, 269
StyD4I	CCNGG	1 cut(s)	298
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	2 cut(s)	158, 236
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	127
XspI	CTAG	2 cut(s)	164, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.