Rh7AG079400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002162
Physical Location & Seq
Forward (+)
5708493 .. 5708881
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG079400.1

Sequence Viewer

Length: 327 bp
ATGGTGGGTGATCCTGTTCCCGAGGAAGACGATGGAGCTACATGTTTGGATGAATGGGCGTCGGCGTCGGGTTTTGGCTTTTCGATCGGTGGTCAAGGTCTGTTCCCTTCCGAAGGCTATGATGGCTTTGATCTTATACGGTTGTGCACTTCTCCGTACAAGGACGATGGTGGCTATGGTGTTCTCGCTAGCGGCGGCCTTGTGGGCTATAGCGGTGGTGGTGGGTTGGAGGCCACCAGCAAGGTTCTTGGTGGCTTTGGGCTTTTGCTAGGGTTTCTCATAATTGGGCTTGTTGGCTTTGGGTTATTATCATTTTTCACGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

10.91

Weight (kDa)

4.05

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 192, 195, 213
AclWI GGATC 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 59, 65
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 41
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 149
Alw44I GTGCAC 1 cut(s) 145
AlwI GGATC 1 cut(s) 5
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 2 cut(s) 196, 231
ApaLI GTGCAC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 20
AsuNHI GCTAGC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 3 cut(s) 26, 116, 161
BfaI CTAG 2 cut(s) 189, 269
BfmI CTRYAG 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 204
BisI GCNGC 2 cut(s) 193, 196
BlsI GCNGC 2 cut(s) 194, 197
BmeT110I CYCGRG 1 cut(s) 20
BmtI GCTAGC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 33
BsaHI GRCGYC 2 cut(s) 59, 65
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 198, 233
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 113
BsnI GGCC 2 cut(s) 198, 233
BsoBI CYCGRG 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 10, 84, 130
BspACI CCGC 3 cut(s) 192, 195, 213
BspANI GGCC 2 cut(s) 198, 233
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 10, 84, 130
BssNI GRCGYC 2 cut(s) 59, 65
Bst4CI ACNGT 1 cut(s) 141
BstACI GRCGYC 2 cut(s) 59, 65
BstC8I GCNNGC 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 3 cut(s) 13, 87, 133
BstMBI GATC 3 cut(s) 10, 84, 130
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 123, 204
BstNSI RCATGY 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 198, 233
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 190
CseI GACGC 2 cut(s) 48, 54
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 42
CviQI GTAC 1 cut(s) 157
DpnI GATC 3 cut(s) 12, 86, 132
DpnII GATC 3 cut(s) 10, 84, 130
Eco88I CYCGRG 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 111
FaeI CATG 1 cut(s) 45
FaiI YATR 6 cut(s) 43, 120, 137, 177, 210, 281
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 193, 196
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 193, 196
FspBI CTAG 2 cut(s) 189, 269
GluI GCNGC 2 cut(s) 193, 196
HaeIII GGCC 2 cut(s) 198, 233
HgaI GACGC 2 cut(s) 48, 54
Hin1I GRCGYC 2 cut(s) 59, 65
Hin1II CATG 1 cut(s) 45
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 20, 319
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 2 cut(s) 64, 70
HpyAV CCTTC 2 cut(s) 107, 117
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 204
Hsp92I GRCGYC 2 cut(s) 59, 65
Hsp92II CATG 1 cut(s) 45
Kzo9I GATC 3 cut(s) 10, 84, 130
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 2 cut(s) 27, 250
MaeI CTAG 2 cut(s) 189, 269
MalI GATC 3 cut(s) 12, 86, 132
MboI GATC 3 cut(s) 10, 84, 130
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 2 cut(s) 16, 223
MwoI GCNNNNNNNGC 2 cut(s) 123, 204
NdeII GATC 3 cut(s) 10, 84, 130
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 45
NspI RCATGY 1 cut(s) 45
PciI ACATGT 1 cut(s) 41
PkrI GCNGC 2 cut(s) 194, 197
Ple19I CGATCG 1 cut(s) 87
PscI ACATGT 1 cut(s) 41
PvuI CGATCG 1 cut(s) 87
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SatI GCNGC 2 cut(s) 193, 196
Sau3AI GATC 3 cut(s) 10, 84, 130
SduI GDGCHC 1 cut(s) 149
SetI ASST 3 cut(s) 40, 100, 246
SfcI CTRYAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 282
SsiI CCGC 3 cut(s) 192, 195, 213
SspMI CTAG 2 cut(s) 189, 269
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 282
TauI GCSGC 2 cut(s) 195, 198
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 144
VneI GTGCAC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 111
XceI RCATGY 1 cut(s) 45
XspI CTAG 2 cut(s) 189, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.