Rh7CG068300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002162
Physical Location & Seq
Reverse (-)
4878806 .. 4879033
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG068300.1

Sequence Viewer

Length: 228 bp
ATGGTGGGTGATCCTGTTCCTGAGGAAGACGGTGGAGCTACATGTTTGGATGAAAGGGCGTCGGCGTCGGGTTTTGGCTTTTCGATCGGTGGCCAAGGTCTGGTCCCTTCCGGAGGCTATGATGGCTTTGATCTGATAAGGTCTTGCACTTCTGCATACAAGGACGATGGTGGCTATGGTGTTCTCGCTAGCGGCGGCCTTGTTGGCTACAGCGGCGGTGGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.24

Weight (kDa)

4.05

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 110
AciI CCGC 4 cut(s) 192, 195, 213, 216
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 91
AcyI GRCGYC 2 cut(s) 59, 65
AfiI CCNNNNNNNGG 2 cut(s) 100, 113
AflIII ACRYGT 1 cut(s) 41
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 110
AoxI GGCC 2 cut(s) 91, 196
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 20
AsuNHI GCTAGC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 103
AxyI CCTNAGG 1 cut(s) 21
BalI TGGCCA 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 33
BccI CCATC 2 cut(s) 116, 161
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 204
BisI GCNGC 3 cut(s) 193, 196, 214
BlsI GCNGC 3 cut(s) 194, 197, 215
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 105
BmtI GCTAGC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 33
BsaHI GRCGYC 2 cut(s) 59, 65
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 113
Bse21I CCTNAGG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 100, 113
BseMII CTCAG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 93, 198
BsiEI CGRYCG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 100, 113
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 2 cut(s) 93, 198
Bsp13I TCCGGA 1 cut(s) 110
Bsp143I GATC 3 cut(s) 10, 84, 130
BspACI CCGC 4 cut(s) 192, 195, 213, 216
BspANI GGCC 2 cut(s) 93, 198
BspCNI CTCAG 1 cut(s) 13
BspEI TCCGGA 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 105
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 3 cut(s) 10, 84, 130
BssNI GRCGYC 2 cut(s) 59, 65
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 59, 65
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 3 cut(s) 13, 87, 133
BstMBI GATC 3 cut(s) 10, 84, 130
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 3 cut(s) 123, 204, 213
BstNSI RCATGY 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 2 cut(s) 93, 198
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 2 cut(s) 48, 54
CviAII CATG 1 cut(s) 42
CviJI RGCY 8 cut(s) 38, 78, 93, 117, 126, 174, 198, 207
CviKI_1 RGCY 8 cut(s) 38, 78, 93, 117, 126, 174, 198, 207
DdeI CTNAG 1 cut(s) 21
DpnI GATC 3 cut(s) 12, 86, 132
DpnII GATC 3 cut(s) 10, 84, 130
EaeI YGGCCR 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 21
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 45
FaiI YATR 4 cut(s) 43, 120, 157, 177
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 3 cut(s) 193, 196, 214
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 193, 196, 214
FspBI CTAG 1 cut(s) 189
GluI GCNGC 3 cut(s) 193, 196, 214
HaeIII GGCC 2 cut(s) 93, 198
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 48, 54
Hin1I GRCGYC 2 cut(s) 59, 65
Hin1II CATG 1 cut(s) 45
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 20, 111
Hpy99I CGWCG 2 cut(s) 64, 70
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 147, 155
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 204, 213
HpyF3I CTNAG 1 cut(s) 21
Hsp92I GRCGYC 2 cut(s) 59, 65
Hsp92II CATG 1 cut(s) 45
Kpn2I TCCGGA 1 cut(s) 110
Kzo9I GATC 3 cut(s) 10, 84, 130
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 27, 33, 86, 124
MaeI CTAG 1 cut(s) 189
MalI GATC 3 cut(s) 12, 86, 132
MboI GATC 3 cut(s) 10, 84, 130
MboII GAAGA 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 93
MnlI CCTC 2 cut(s) 16, 107
Mox20I TGGCCA 1 cut(s) 93
MroI TCCGGA 1 cut(s) 110
MscI TGGCCA 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 123, 204, 213
NdeII GATC 3 cut(s) 10, 84, 130
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 105
NspI RCATGY 1 cut(s) 45
PciI ACATGT 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 3 cut(s) 194, 197, 215
Ple19I CGATCG 1 cut(s) 87
PscI ACATGT 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 103
PvuI CGATCG 1 cut(s) 87
SatI GCNGC 3 cut(s) 193, 196, 214
Sau3AI GATC 3 cut(s) 10, 84, 130
Sau96I GGNCC 1 cut(s) 103
SetI ASST 3 cut(s) 40, 100, 143
SfcI CTRYAG 1 cut(s) 208
SinI GGWCC 1 cut(s) 103
SsiI CCGC 4 cut(s) 192, 195, 213, 216
SspMI CTAG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 83
TauI GCSGC 3 cut(s) 195, 198, 216
TspDTI ATGAA 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 111
XceI RCATGY 1 cut(s) 45
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.