Rh7DG035000

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002162
Physical Location & Seq
Forward (+)
2626581 .. 2626883
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG035000.1

Sequence Viewer

Length: 303 bp
ATGCACGGCCGCCTGGACGTACATCATGTTCAGCAACGCCGGAATATTCTGCTGTCCGAGCAGACGGTGCTGGAGTTTGAATTATCCAAGTACGACAAGCTCATGGCAGTCAATGTATGTGGGATGGCGGCGTGTGTGAAGCACGCAGCGCGGGCCATGGTGGAAGTTGGAGTTAAGGGGAGCGTGACATTCACGGCGAGCGTTGTAGCGACCATTGGATTAGAGTGGTTCAAAGACTACACCATGTCAAAGCACGCCATTTTGGGGCTGGTGGGGTCGGCGAGTGTCCAGCTCGGCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

100

Amino Acids

10.86

Weight (kDa)

8.69

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 20 - 98 7e-11 short chain dehydrogenase
adh_short_C2 PF13561 20 - 99 1.5e-10 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 151, 299
AciI CCGC 3 cut(s) 10, 128, 151
AcoI YGGCCR 1 cut(s) 7
AfaI GTAC 2 cut(s) 21, 92
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 80, 232
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 2 cut(s) 100, 292
AluI AGCT 2 cut(s) 100, 292
AoxI GGCC 2 cut(s) 7, 153
ApeKI GCWGC 1 cut(s) 146
AspLEI GCGC 2 cut(s) 151, 299
AspS9I GGNCC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 118
BceAI ACGGC 2 cut(s) 22, 210
BciT130I CCWGG 1 cut(s) 14
BisI GCNGC 3 cut(s) 10, 129, 147
BlsI GCNGC 3 cut(s) 11, 130, 148
Bme1390I CCNGG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 264
BseX3I CGGCCG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 158
Bsh1236I CGCG 2 cut(s) 151, 299
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 9, 155
BsiEI CGRYCG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 264
BsnI GGCC 2 cut(s) 9, 155
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 3 cut(s) 10, 128, 151
BspANI GGCC 2 cut(s) 9, 155
BspFNI CGCG 2 cut(s) 151, 299
BssECI CCNNGG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 67
BstC8I GCNNGC 4 cut(s) 144, 153, 199, 255
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 2 cut(s) 151, 299
BstHHI GCGC 2 cut(s) 151, 299
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 58, 67, 148, 152
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 2 cut(s) 151, 299
BstV1I GCAGC 1 cut(s) 158
BstZI CGGCCG 1 cut(s) 7
BsuRI GGCC 2 cut(s) 9, 155
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 4 cut(s) 144, 153, 199, 255
CfoI GCGC 2 cut(s) 151, 299
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 2 cut(s) 20, 91
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 4 cut(s) 26, 103, 157, 244
CviJI RGCY 5 cut(s) 9, 100, 155, 268, 292
CviKI_1 RGCY 5 cut(s) 9, 100, 155, 268, 292
CviQI GTAC 2 cut(s) 20, 91
EaeI YGGCCR 1 cut(s) 7
EagI CGGCCG 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 4 cut(s) 29, 106, 160, 247
FaiI YATR 5 cut(s) 27, 104, 118, 158, 245
FatI CATG 4 cut(s) 25, 102, 156, 243
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 10, 129, 147
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 10, 129, 147
GlaI GCGC 2 cut(s) 150, 298
GluI GCNGC 3 cut(s) 10, 129, 147
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 2 cut(s) 9, 155
HapII CCGG 1 cut(s) 40
HhaI GCGC 2 cut(s) 151, 299
Hin1II CATG 4 cut(s) 29, 106, 160, 247
Hin6I GCGC 2 cut(s) 149, 297
HinP1I GCGC 2 cut(s) 149, 297
HpaII CCGG 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 67, 148, 152
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 4 cut(s) 29, 106, 160, 247
HspAI GCGC 2 cut(s) 149, 297
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 4 cut(s) 26, 53, 56, 254
Lsp1109I GCAGC 1 cut(s) 158
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 184
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 148
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 2 cut(s) 151, 299
MwoI GCNNNNNNNGC 4 cut(s) 58, 67, 148, 152
NcoI CCATGG 1 cut(s) 156
NlaIII CATG 4 cut(s) 29, 106, 160, 247
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 11, 130, 148
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 12, 44
RsaI GTAC 2 cut(s) 21, 92
RsaNI GTAC 2 cut(s) 20, 91
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 3 cut(s) 10, 129, 147
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 14
SetI ASST 3 cut(s) 21, 102, 294
Sse9I AATT 1 cut(s) 80
SsiI CCGC 3 cut(s) 10, 128, 151
SspI AATATT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 21
TasI AATT 1 cut(s) 80
TauI GCSGC 2 cut(s) 12, 131
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.