Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

3254944 .. 3255379

Gene Structure 436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG047700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGGGTGACCCTACTACTGAGGAAGACGATGGAGCTATATCCATGGGTGAATGGGCGCCGGCGCCGAGTTTTGGCTTTTCAATTGGTGGTCAAGGTCTTGTCCCTCTCGCAGGCTATGATCTAATACGGTTTTGCACTCCTCAGTACAAGGATGATGGTGGCTATAGTGTTCTCGCTGGCGACAACCTTGTTGGCTACGGCGGCGGTAGTGGGTTGGAGGCCACCAAGGTTGCAATTGTTCTTGGTGGCCTTGGGCTTTTGCTAGGGTTTCTCATAATTGGGCATATTGGGTTAGCGTGGACTGGTTTAACTTGGGCTCATAGCATGATTAGGTTCGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

11.92

Weight (kDa)

4.29

Isoelectric Point (pI)

25.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 64
AciI	CCGC	2 cut(s)	204, 207
AcyI	GRCGYC	2 cut(s)	59, 65
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	74, 113
AgsI	TTSAA	1 cut(s)	84
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AoxI	GGCC	2 cut(s)	222, 250
AspLEI	GCGC	2 cut(s)	61, 67
AsuHPI	GGTGA	2 cut(s)	20, 62
BanI	GGYRCC	2 cut(s)	58, 64
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	33
BccI	CCATC	2 cut(s)	26, 152
BceAI	ACGGC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	2 cut(s)	62, 68
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	60, 66
BpiI	GAAGAC	1 cut(s)	33
BsaHI	GRCGYC	2 cut(s)	59, 65
BsaJI	CCNNGG	3 cut(s)	45, 228, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 113
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	45, 228, 253
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	74, 113
BseMII	CTCAG	2 cut(s)	12, 158
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	224, 252
BshNI	GGYRCC	2 cut(s)	58, 64
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	74, 113
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	224, 252
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	2 cut(s)	204, 207
BspANI	GGCC	2 cut(s)	224, 252
BspCNI	CTCAG	2 cut(s)	13, 157
BspLI	GGNNCC	2 cut(s)	60, 66
BspT107I	GGYRCC	2 cut(s)	58, 64
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	3 cut(s)	45, 228, 253
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	2 cut(s)	59, 65
BssT1I	CCWWGG	3 cut(s)	45, 228, 253
Bst4CI	ACNGT	1 cut(s)	132
BstACI	GRCGYC	2 cut(s)	59, 65
BstC8I	GCNNGC	3 cut(s)	63, 115, 181
BstDEI	CTNAG	2 cut(s)	21, 144
BstDSI	CCRYGG	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	8
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	2 cut(s)	62, 68
BstHHI	GCGC	2 cut(s)	61, 67
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	224, 252
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	63, 115, 181
CfoI	GCGC	2 cut(s)	61, 67
Cfr10I	RCCGGY	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	2 cut(s)	46, 328
CviJI	RGCY	9 cut(s)	38, 78, 117, 165, 198, 224, 252, 259, 320
CviKI_1	RGCY	9 cut(s)	38, 78, 117, 165, 198, 224, 252, 259, 320
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	21, 144
DinI	GGCGCC	2 cut(s)	60, 66
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco130I	CCWWGG	3 cut(s)	45, 228, 253
Eco24I	GRGCYC	1 cut(s)	322
Eco91I	GGTNACC	1 cut(s)	8
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	8
EcoT14I	CCWWGG	3 cut(s)	45, 228, 253
EcoT38I	GRGCYC	1 cut(s)	322
EgeI	GGCGCC	2 cut(s)	60, 66
EheI	GGCGCC	2 cut(s)	60, 66
ErhI	CCWWGG	3 cut(s)	45, 228, 253
FaeI	CATG	2 cut(s)	49, 331
FaiI	YATR	8 cut(s)	41, 47, 120, 168, 278, 288, 324, 329
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	45, 327
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	2 cut(s)	60, 66
GluI	GCNGC	1 cut(s)	205
HaeII	RGCGCY	2 cut(s)	62, 68
HaeIII	GGCC	2 cut(s)	224, 252
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	2 cut(s)	61, 67
Hin1I	GRCGYC	2 cut(s)	59, 65
Hin1II	CATG	2 cut(s)	49, 331
Hin6I	GCGC	2 cut(s)	59, 65
HinP1I	GCGC	2 cut(s)	59, 65
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	20, 62
Hpy166II	GTNNAC	1 cut(s)	303
Hpy8I	GTNNAC	1 cut(s)	303
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	138, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	2 cut(s)	21, 144
Hsp92I	GRCGYC	2 cut(s)	59, 65
Hsp92II	CATG	2 cut(s)	49, 331
HspAI	GCGC	2 cut(s)	59, 65
KasI	GGCGCC	2 cut(s)	58, 64
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	75, 99, 165, 291
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	38
MfeI	CAATTG	2 cut(s)	84, 237
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	3 cut(s)	84, 237, 279
Mly113I	GGCGCC	2 cut(s)	59, 65
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	16, 117, 153, 214
MreI	CGCCGGCG	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	61
MseI	TTAA	1 cut(s)	311
MspI	CCGG	1 cut(s)	62
MunI	CAATTG	2 cut(s)	84, 237
MwoI	GCNNNNNNNGC	1 cut(s)	204
NaeI	GCCGGC	1 cut(s)	63
NarI	GGCGCC	2 cut(s)	59, 65
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	49, 331
NlaIV	GGNNCC	2 cut(s)	60, 66
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	8
PdiI	GCCGGC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	206
PluTI	GGCGCC	2 cut(s)	62, 68
PspEI	GGTNACC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	60, 66
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	5 cut(s)	40, 100, 192, 234, 338
SfcI	CTRYAG	1 cut(s)	166
SfoI	GGCGCC	2 cut(s)	60, 66
SgrAI	CRCCGGYG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	84, 237, 279
SsiI	CCGC	2 cut(s)	204, 207
SspDI	GGCGCC	2 cut(s)	58, 64
SspMI	CTAG	1 cut(s)	266
StyI	CCWWGG	3 cut(s)	45, 228, 253
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	84, 237, 279
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
XagI	CCTNNNNNAGG	1 cut(s)	111
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.