Rh6AG101800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002162
Physical Location & Seq
Forward (+)
15152324 .. 15152686
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG101800.1

Sequence Viewer

Length: 363 bp
ATGCTCTTCCTTCTGAGAGCGTTTCTAGGGTTTCTAGCTGTGGTTCATGGCGGCACTGCAAACTCAGCTAGTAAGGGCGGGTTTCCTTTTCCTTCTGGTTCCTTTGAAGATGGCGGCGAGGGAGCCATTCATCGATGCCTATTCCTGACTCCTTCAAGGGAAATTTCTCGATTGCGATTGACGTCTGTTGGTGGTAGTCTTGTACCTTGGAAGGGAGGTAGCGCTCTCCTTCCTTCTCCCTTTTTCCGTGGTGGTGACAACGATGGCGGTATATGTGGTATTGCCGGTGACTCTACACTGGGTATGTGTTCTGGGAGTACGATCGGTGATGGAGATTGGGCTTCCTTAGATCCGGGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.17

Weight (kDa)

5.48

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 185
AciI CCGC 4 cut(s) 51, 78, 114, 267
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 2 cut(s) 204, 319
AfeI AGCGCT 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 107, 156
AluBI AGCT 2 cut(s) 38, 68
AluI AGCT 2 cut(s) 38, 68
AlwI GGATC 1 cut(s) 344
Aor51HI AGCGCT 1 cut(s) 223
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 3 cut(s) 266, 299, 338
BccI CCATC 3 cut(s) 104, 257, 323
BcnI CCSGG 1 cut(s) 354
BfaI CTAG 3 cut(s) 26, 35, 69
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 2 cut(s) 52, 115
BlsI GCNGC 2 cut(s) 53, 116
Bme1390I CCNGG 1 cut(s) 354
BmiI GGNNCC 2 cut(s) 100, 124
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 206, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 133
BseDI CCNNGG 2 cut(s) 206, 247
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 2 cut(s) 5, 78
BseNI ACTGG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 324
BshVI ATCGAT 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 324
BsiSI CCGG 2 cut(s) 285, 353
BslI CCNNNNNNNGG 1 cut(s) 212
Bsp143I GATC 2 cut(s) 321, 349
BspACI CCGC 4 cut(s) 51, 78, 114, 267
BspCNI CTCAG 2 cut(s) 6, 77
BspDI ATCGAT 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 100, 124
BspPI GGATC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 206, 247
BssMI GATC 2 cut(s) 321, 349
BssNI GRCGYC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 14, 64, 346
BstDSI CCRYGG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 2 cut(s) 324, 352
BstMBI GATC 2 cut(s) 321, 349
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 296
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 284
ClaI ATCGAT 1 cut(s) 133
Csp6I GTAC 2 cut(s) 203, 318
CviAII CATG 1 cut(s) 47
CviJI RGCY 4 cut(s) 38, 68, 125, 341
CviKI_1 RGCY 4 cut(s) 38, 68, 125, 341
CviQI GTAC 2 cut(s) 203, 318
DdeI CTNAG 3 cut(s) 14, 64, 346
DpnI GATC 2 cut(s) 323, 351
DpnII GATC 2 cut(s) 321, 349
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 206
Eco47III AGCGCT 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 50
FaiI YATR 4 cut(s) 48, 272, 274, 305
FatI CATG 1 cut(s) 46
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 52, 115
Fsp4HI GCNGC 2 cut(s) 52, 115
FspBI CTAG 3 cut(s) 26, 35, 69
GlaI GCGC 1 cut(s) 223
GluI GCNGC 2 cut(s) 52, 115
HaeII RGCGCY 1 cut(s) 225
HapII CCGG 2 cut(s) 285, 353
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 2 cut(s) 148, 290
HpaII CCGG 2 cut(s) 285, 353
HphI GGTGA 3 cut(s) 266, 299, 338
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 145, 168
HpyAV CCTTC 6 cut(s) 20, 102, 162, 205, 239, 243
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 14, 64, 346
HpySE526I ACGT 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 321, 349
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 5 cut(s) 81, 158, 284, 297, 298
LweI GCATC 1 cut(s) 125
MaeI CTAG 3 cut(s) 26, 35, 69
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 254, 287
MalI GATC 2 cut(s) 323, 351
MboI GATC 2 cut(s) 321, 349
MboII GAAGA 1 cut(s) 119
MflI RGATCY 1 cut(s) 349
MluCI AATT 1 cut(s) 162
MlyI GAGTC 2 cut(s) 142, 284
MnlI CCTC 2 cut(s) 112, 209
MspI CCGG 2 cut(s) 285, 353
MspR9I CCNGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 354
NdeII GATC 2 cut(s) 321, 349
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 2 cut(s) 100, 124
NmuCI GTSAC 2 cut(s) 254, 287
PciSI GCTCTTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 53, 116
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 2 cut(s) 142, 284
PpsI GAGTC 2 cut(s) 142, 284
PspN4I GGNNCC 2 cut(s) 100, 124
PsuI RGATCY 1 cut(s) 349
PvuI CGATCG 1 cut(s) 324
RsaI GTAC 2 cut(s) 204, 319
RsaNI GTAC 2 cut(s) 203, 318
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 2 cut(s) 52, 115
Sau3AI GATC 2 cut(s) 321, 349
SchI GAGTC 2 cut(s) 142, 284
ScrFI CCNGG 1 cut(s) 354
SetI ASST 5 cut(s) 40, 70, 185, 208, 220
SfaNI GCATC 1 cut(s) 125
Sse9I AATT 1 cut(s) 162
SsiI CCGC 4 cut(s) 51, 78, 114, 267
SspMI CTAG 3 cut(s) 26, 35, 69
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 206
TaiI ACGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 133, 169
TasI AATT 1 cut(s) 162
TauI GCSGC 2 cut(s) 54, 117
TscAI CASTG 2 cut(s) 61, 303
TseFI GTSAC 2 cut(s) 254, 287
Tsp45I GTSAC 2 cut(s) 254, 287
TspDTI ATGAA 2 cut(s) 35, 119
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 61, 303
XapI RAATTY 1 cut(s) 162
XspI CTAG 3 cut(s) 26, 35, 69
ZraI GACGTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.