Rh6AG101900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002162
Physical Location & Seq
Forward (+)
15152981 .. 15153814
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG101900.1

Sequence Viewer

Length: 201 bp
ATGTTCTGGCCTGAGTCGACTTGTTTTGGAGGCTGGAGAGGCGGCTCTAGTTCTGGAAGCAGGTTGGGTGTTGATCATGGCGTTCGAGGTGGCGGCAGCGGTGATCAAGATGGTGGGGCGGCGGAGGCGCCCAAGTTGGCCATAATTCTTCTAGGGTTCCATCTTTGGAGAAGGGAGTTAGCTGGTGAACTACATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.92

Weight (kDa)

6.24

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 17
AciI CCGC 5 cut(s) 42, 93, 99, 119, 122
AcoI YGGCCR 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 128
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AoxI GGCC 2 cut(s) 8, 138
ApeKI GCWGC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 113, 197
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 108
BccI CCATC 2 cut(s) 104, 168
BclI TGATCA 2 cut(s) 73, 103
BfaI CTAG 3 cut(s) 48, 152, 199
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 51
BisI GCNGC 4 cut(s) 43, 94, 97, 120
BlsI GCNGC 4 cut(s) 44, 95, 98, 121
BmiI GGNNCC 2 cut(s) 129, 158
BpmI CTGGAG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 128
BseXI GCAGC 1 cut(s) 108
BshFI GGCC 2 cut(s) 10, 140
BshNI GGYRCC 1 cut(s) 127
BsnI GGCC 2 cut(s) 10, 140
Bsp143I GATC 2 cut(s) 73, 103
BspACI CCGC 5 cut(s) 42, 93, 99, 119, 122
BspANI GGCC 2 cut(s) 10, 140
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 2 cut(s) 129, 158
BspMI ACCTGC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 127
BssMI GATC 2 cut(s) 73, 103
BssNI GRCGYC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 12
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 76, 106
BstMBI GATC 2 cut(s) 73, 103
BstMWI GCNNNNNNNGC 2 cut(s) 39, 125
BstV1I GCAGC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 10, 140
BveI ACCTGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 130
CviAII CATG 1 cut(s) 77
CviJI RGCY 5 cut(s) 10, 33, 45, 140, 182
CviKI_1 RGCY 5 cut(s) 10, 33, 45, 140, 182
DdeI CTNAG 1 cut(s) 12
DinI GGCGCC 1 cut(s) 129
DpnI GATC 2 cut(s) 75, 105
DpnII GATC 2 cut(s) 73, 103
EaeI YGGCCR 1 cut(s) 138
EciI GGCGGA 1 cut(s) 137
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
FaeI CATG 1 cut(s) 80
FaiI YATR 3 cut(s) 78, 143, 195
FatI CATG 1 cut(s) 76
FbaI TGATCA 2 cut(s) 73, 103
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 43, 94, 97, 120
Fsp4HI GCNGC 4 cut(s) 43, 94, 97, 120
FspBI CTAG 3 cut(s) 48, 152, 199
GlaI GCGC 1 cut(s) 129
GluI GCNGC 4 cut(s) 43, 94, 97, 120
GsuI CTGGAG 1 cut(s) 55
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 10, 140
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 1 cut(s) 14
HphI GGTGA 2 cut(s) 113, 197
Hpy166II GTNNAC 2 cut(s) 18, 188
Hpy188III TCNNGA 2 cut(s) 54, 107
Hpy8I GTNNAC 2 cut(s) 18, 188
HpyAV CCTTC 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 125
HpyF3I CTNAG 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
Ksp22I TGATCA 2 cut(s) 73, 103
Kzo9I GATC 2 cut(s) 73, 103
LpnPI CCDG 5 cut(s) 19, 24, 39, 46, 168
Lsp1109I GCAGC 1 cut(s) 108
MaeI CTAG 3 cut(s) 48, 152, 199
MalI GATC 2 cut(s) 75, 105
MboI GATC 2 cut(s) 73, 103
MboII GAAGA 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 144
MluNI TGGCCA 1 cut(s) 140
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 4 cut(s) 23, 32, 80, 118
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 39, 125
NarI GGCGCC 1 cut(s) 128
NdeII GATC 2 cut(s) 73, 103
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 2 cut(s) 129, 158
PkrI GCNGC 4 cut(s) 44, 95, 98, 121
PleI GAGTC 1 cut(s) 22
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 129, 158
SalI GTCGAC 1 cut(s) 16
SatI GCNGC 4 cut(s) 43, 94, 97, 120
Sau3AI GATC 2 cut(s) 73, 103
SchI GAGTC 1 cut(s) 23
SetI ASST 3 cut(s) 65, 91, 184
SfoI GGCGCC 1 cut(s) 129
Sse9I AATT 1 cut(s) 144
SsiI CCGC 5 cut(s) 42, 93, 99, 119, 122
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 3 cut(s) 48, 152, 199
TaqI TCGA 2 cut(s) 17, 85
TasI AATT 1 cut(s) 144
TauI GCSGC 3 cut(s) 45, 96, 122
TseI GCWGC 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 17
XspI CTAG 3 cut(s) 48, 152, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.