Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002162

Physical Location & Seq

Genomic Coordinates Forward (+)

9984715 .. 9986178

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTCTGGCCTGAGTCGACTTGTTTTGGAGGCTGGAGAGGCGGCTCTAGTTCTGGAAGCAGGTTGGGTGTTGATCATGGCGTTCGAGGTGGCGGCAGCGGTGATCAAGATGGTGGGGCGGCGGAGGCGCCCAAGTTGGCCATAATTCTTCTAGGGTTTGTGTTGAATGCTTGTCTTCGGCCTGGATCTAGGCTTGGTTGGGAGTCCTTGTTTGGGTTTCCTATTCCTGGGCTTGGTGGGCCTGTTGGGATTTTTCATTTTGGAAGGGATGGAAGAGGGTATAAAAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.07

Weight (kDa)

8.84

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400881 RchiOBHm_Chr7g0184531
rosa_laevigata	RLG00000003471 RLG00000004354 RLG00000005258 RLG00000008932 RLG00000009611 RLG00000011994 RLG00000014557 RLG00000020955 RLG00000023365 RLG00000032471
rosa_multiflora	Rmu_sc0003322.1_g000015 Rmu_sc0005690.1_g000014
rosa_roxburghii	Rroxscaffold_2G00151140 Rroxscaffold_4G00310150 Rroxscaffold_6G00393640
rosa_rugosa	Rorug03G0118800 Rorug03G0189200 Rorug03G0357400 Rorug07G0128400
rosa_samantha	Rh2AG289100 Rh2AG289200 Rh2BG207400 Rh2CG330800 Rh3AG046600 Rh3CG047700 Rh3DG048600 Rh4CG349400 Rh6AG101800 Rh6AG101900 Rh6DG085300 Rh7AG034700 Rh7AG034800 Rh7AG068700 Rh7AG079400 Rh7AG220200 Rh7BG139700 Rh7BG216200 Rh7BG348800 Rh7CG068300 Rh7CG489100 Rh7DG035000 Rh7DG457600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	5 cut(s)	42, 93, 99, 119, 122
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	213, 227, 233
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	181, 226
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	4 cut(s)	8, 138, 179, 239
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	104, 263
BciT130I	CCWGG	2 cut(s)	183, 228
BclI	TGATCA	2 cut(s)	73, 103
BfaI	CTAG	3 cut(s)	48, 152, 189
BfoI	RGCGCY	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	4 cut(s)	43, 94, 97, 120
BlsI	GCNGC	4 cut(s)	44, 95, 98, 121
Bme1390I	CCNGG	2 cut(s)	183, 228
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	183, 228
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 227, 233
BseBI	CCWGG	2 cut(s)	183, 228
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	213, 227, 233
BseXI	GCAGC	1 cut(s)	108
BshFI	GGCC	4 cut(s)	10, 140, 181, 241
BshNI	GGYRCC	1 cut(s)	127
BslI	CCNNNNNNNGG	3 cut(s)	213, 227, 233
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	4 cut(s)	10, 140, 181, 241
Bsp143I	GATC	3 cut(s)	73, 103, 185
BspACI	CCGC	5 cut(s)	42, 93, 99, 119, 122
BspANI	GGCC	4 cut(s)	10, 140, 181, 241
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	3 cut(s)	73, 103, 185
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	183, 228
Bst6I	CTCTTC	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	76, 106, 188
BstMBI	GATC	3 cut(s)	73, 103, 185
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 125, 238
BstNI	CCWGG	2 cut(s)	183, 228
BstSCI	CCNGG	2 cut(s)	181, 226
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	4 cut(s)	10, 140, 181, 241
BtsCI	GGATG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	51
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	239
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	8 cut(s)	10, 33, 45, 140, 181, 193, 232, 241
CviKI_1	RGCY	8 cut(s)	10, 33, 45, 140, 181, 193, 232, 241
DdeI	CTNAG	1 cut(s)	12
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	3 cut(s)	75, 105, 187
DpnII	GATC	3 cut(s)	73, 103, 185
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	181, 226
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
FaeI	CATG	1 cut(s)	80
FaiI	YATR	3 cut(s)	78, 143, 282
FatI	CATG	1 cut(s)	76
FbaI	TGATCA	2 cut(s)	73, 103
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	4 cut(s)	43, 94, 97, 120
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	4 cut(s)	43, 94, 97, 120
FspBI	CTAG	3 cut(s)	48, 152, 189
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	4 cut(s)	43, 94, 97, 120
GsuI	CTGGAG	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	10, 140, 181, 241
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	14, 203
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	54, 107
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 125, 238
HpyF3I	CTNAG	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	128
KasI	GGCGCC	1 cut(s)	127
Ksp22I	TGATCA	2 cut(s)	73, 103
Kzo9I	GATC	3 cut(s)	73, 103, 185
LpnPI	CCDG	9 cut(s)	19, 24, 39, 46, 168, 195, 213, 240, 255
Lsp1109I	GCAGC	1 cut(s)	108
MaeI	CTAG	3 cut(s)	48, 152, 189
MalI	GATC	3 cut(s)	75, 105, 187
MboI	GATC	3 cut(s)	73, 103, 185
MboII	GAAGA	3 cut(s)	140, 167, 285
MflI	RGATCY	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	140
Mly113I	GGCGCC	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	23, 212
MnlI	CCTC	5 cut(s)	23, 32, 80, 118, 269
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	183, 228
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	2 cut(s)	183, 228
MwoI	GCNNNNNNNGC	3 cut(s)	39, 125, 238
NarI	GGCGCC	1 cut(s)	128
NdeII	GATC	3 cut(s)	73, 103, 185
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	44, 95, 98, 121
PleI	GAGTC	2 cut(s)	22, 211
PluTI	GGCGCC	1 cut(s)	131
PpsI	GAGTC	2 cut(s)	22, 211
Psp6I	CCWGG	2 cut(s)	181, 226
PspGI	CCWGG	2 cut(s)	181, 226
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	4 cut(s)	43, 94, 97, 120
Sau3AI	GATC	3 cut(s)	73, 103, 185
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	2 cut(s)	23, 212
ScrFI	CCNGG	2 cut(s)	183, 228
SetI	ASST	2 cut(s)	65, 91
SfoI	GGCGCC	1 cut(s)	129
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	5 cut(s)	42, 93, 99, 119, 122
SspDI	GGCGCC	1 cut(s)	127
SspMI	CTAG	3 cut(s)	48, 152, 189
StyD4I	CCNGG	2 cut(s)	181, 226
TaqI	TCGA	2 cut(s)	17, 85
TasI	AATT	1 cut(s)	144
TauI	GCSGC	3 cut(s)	45, 96, 122
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	3 cut(s)	48, 152, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.