Rh7AG034800

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002162
Physical Location & Seq
Forward (+)
2402000 .. 2402302
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG034800.1

Sequence Viewer

Length: 303 bp
ATGCACGGCCGCCTGGAGGTACATCATGTTCAGCAACGCCGGAATATTCTGCTGTCTAAGCAGACGGTGCTGGAGTTTGAATTATCCAAGTACGACAAGCTCATGGCGGTCAATGTACGTGGGATGGCGGCGTGTGTGAACCACGCGGCGCGGGCCATGGTGGAAGGTGGAGTTCAGGGGAGCGTGACATTCACGGTGAGCGTTGTAGCGACTACTGGATTAGAGTGGTTCAAAGACTACACCATGTCAAAGCACGCCATTTTGGGGCTGATGAGGTTGGCAAGTGTCCAGCTTGGCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

100

Amino Acids

11.04

Weight (kDa)

9.65

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 20 - 98 2.1e-11 short chain dehydrogenase
adh_short_C2 PF13561 20 - 99 2.4e-11 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 146, 151, 299
AciI CCGC 5 cut(s) 10, 107, 128, 146, 151
AcoI YGGCCR 1 cut(s) 7
AfaI GTAC 3 cut(s) 21, 92, 117
AfiI CCNNNNNNNGG 2 cut(s) 16, 264
AgsI TTSAA 2 cut(s) 80, 232
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 2 cut(s) 100, 292
AluI AGCT 2 cut(s) 100, 292
AoxI GGCC 2 cut(s) 7, 153
AspLEI GCGC 2 cut(s) 151, 299
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 208
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 14
BisI GCNGC 3 cut(s) 10, 129, 147
BlsI GCNGC 3 cut(s) 11, 130, 148
Bme1390I CCNGG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 35, 92
BsaAI YACGTR 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 264
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 16, 264
BseNI ACTGG 1 cut(s) 220
BseX3I CGGCCG 1 cut(s) 7
Bsh1236I CGCG 3 cut(s) 146, 151, 299
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 9, 155
BsiEI CGRYCG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 16, 264
BsnI GGCC 2 cut(s) 9, 155
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 5 cut(s) 10, 107, 128, 146, 151
BspANI GGCC 2 cut(s) 9, 155
BspFNI CGCG 3 cut(s) 146, 151, 299
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 67, 196
BstAPI GCANNNNNTGC 1 cut(s) 67
BstBAI YACGTR 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 153, 255
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 3 cut(s) 146, 151, 299
BstHHI GCGC 2 cut(s) 151, 299
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 58, 67, 152
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 3 cut(s) 146, 151, 299
BstZI CGGCCG 1 cut(s) 7
BsuRI GGCC 2 cut(s) 9, 155
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 153, 255
CfoI GCGC 2 cut(s) 151, 299
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 3 cut(s) 20, 91, 116
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 4 cut(s) 26, 103, 157, 244
CviJI RGCY 5 cut(s) 9, 100, 155, 268, 292
CviKI_1 RGCY 5 cut(s) 9, 100, 155, 268, 292
CviQI GTAC 3 cut(s) 20, 91, 116
DdeI CTNAG 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 7
EagI CGGCCG 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 4 cut(s) 29, 106, 160, 247
FaiI YATR 4 cut(s) 27, 104, 158, 245
FatI CATG 4 cut(s) 25, 102, 156, 243
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 10, 129, 147
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 10, 129, 147
GlaI GCGC 2 cut(s) 150, 298
GluI GCNGC 3 cut(s) 10, 129, 147
GsuI CTGGAG 2 cut(s) 35, 92
HaeIII GGCC 2 cut(s) 9, 155
HapII CCGG 1 cut(s) 40
HhaI GCGC 2 cut(s) 151, 299
Hin1II CATG 4 cut(s) 29, 106, 160, 247
Hin6I GCGC 2 cut(s) 149, 297
HinP1I GCGC 2 cut(s) 149, 297
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 67, 196
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 67, 152
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 4 cut(s) 29, 106, 160, 247
HspAI GCGC 2 cut(s) 149, 297
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 5 cut(s) 26, 53, 56, 161, 201
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 184
MluCI AATT 1 cut(s) 80
MnlI CCTC 2 cut(s) 10, 267
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 3 cut(s) 146, 151, 299
MwoI GCNNNNNNNGC 3 cut(s) 58, 67, 152
NcoI CCATGG 1 cut(s) 156
NlaIII CATG 4 cut(s) 29, 106, 160, 247
NmuCI GTSAC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 11, 130, 148
Ppu21I YACGTR 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 12, 44
RsaI GTAC 3 cut(s) 21, 92, 117
RsaNI GTAC 3 cut(s) 20, 91, 116
SatI GCNGC 3 cut(s) 10, 129, 147
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 14
SetI ASST 6 cut(s) 21, 102, 121, 169, 278, 294
Sse9I AATT 1 cut(s) 80
SsiI CCGC 5 cut(s) 10, 107, 128, 146, 151
SspI AATATT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 67, 196
TaiI ACGT 1 cut(s) 121
TasI AATT 1 cut(s) 80
TauI GCSGC 3 cut(s) 12, 131, 149
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.