Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

41491621 .. 41494292

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24971

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATTATCACTATCTTGATTGGTCAAATTTTTTATAGGAAACTTGATAAACTGGAGGAAGAGTTTTCAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAATCTCTCTACAACAAGTATTGTAAACGGTGATGCTGGACCTGAAGGAGATTCTAATGAAGCTGCCACAAAGCAGGAGCCTGCAACCTGTAAATGCACTTGTGTAAAAGCTGTTACTGAACCAGATTTAGTTGCTTTCATACGCTCTAGAGTGAATGGAGTGCCTGGATTCTGGCTCCATGCTTTATCAAAAAATAACTTGCTAACACGAGAGGTGATTGTTTCTGCAGAATGCTTCTCAACTTTGTTAGTTATACAAATTACTGCATTGATCAATTGTTTTCCCTCTTATCTTTTCAACCAGATTATTGGGCGTGACACTGAAGCTCTTGCATATCTTAGAGACATCAAGGGGTCCAAGATAGATGGTGACAACAAGGGATTTAAACTCGACTTCTATTTTGAACCTAATAACTTTTTTATGAACCCGGTTTTGACCAAGACATATCATATGGTTGATGAAGGTGTACCCATTCTAGCAAAAGCAATAGGGACGGAAATTGAATGGTATCCAGGTCGTTGCTTGACAAAGAACACCATTGAGAAGAATAGTAAGAAAGGATCTTTTCCCAAACGAACTGAAAATCGTAAAAGTTTCTTCAACTTTTTCAGTACATATAAAGTCCTTGAAGATATTGATGCTGTTAGAAACCAAATGGAAATAGATTATGAAATTGGCTTTGTGAAGGACGTACTGGTTGACTTATTTCTTCCGTCTTGTTATTTGGCTGTTTCTTGGTTTACGGGGGAGGCTTGGAGAAGTACGGATGAATACAGTGACACTGAGGGTGATGATGACGAAGATGATGATGAGGATGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

311

Amino Acids

35.4

Weight (kDa)

4.66

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	137 - 287	1.2e-32	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	174, 453
AfaI	GTAC	4 cut(s)	579, 724, 804, 874
AgsI	TTSAA	6 cut(s)	69, 409, 515, 614, 712, 740
AjnI	CCWGG	2 cut(s)	274, 622
AluBI	AGCT	3 cut(s)	173, 221, 437
AluI	AGCT	3 cut(s)	173, 221, 437
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	679
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	27
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AspS9I	GGNCC	2 cut(s)	149, 465
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	4 cut(s)	152, 337, 491, 911
AvaII	GGWCC	2 cut(s)	149, 465
BauI	CACGAG	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	276, 624
BciVI	GTATCC	1 cut(s)	630
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	258, 587
BfmI	CTRYAG	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	3 cut(s)	276, 539, 624
Bme18I	GGWCC	2 cut(s)	149, 465
BmgT120I	GGNCC	2 cut(s)	149, 465
BmiI	GGNNCC	3 cut(s)	189, 287, 466
BmrFI	CCNGG	3 cut(s)	276, 539, 624
BmsI	GCATC	2 cut(s)	133, 739
BpmI	CTGGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	539
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	2 cut(s)	57, 810
BseBI	CCWGG	2 cut(s)	276, 624
BseGI	GGATG	2 cut(s)	883, 931
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	2 cut(s)	57, 810
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	616
BsmI	GAATGC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	381, 671
BspCNI	CTCAG	1 cut(s)	886
BspLI	GGNNCC	3 cut(s)	189, 287, 466
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	679
BsrI	ACTGG	2 cut(s)	57, 810
BssMI	GATC	2 cut(s)	381, 671
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	276, 624
Bst4CI	ACNGT	2 cut(s)	140, 887
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	85, 449, 894
BstF5I	GGATG	2 cut(s)	883, 931
BstKTI	GATC	2 cut(s)	384, 674
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	381, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	2 cut(s)	276, 624
BstSCI	CCNGG	3 cut(s)	274, 537, 622
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	671
BstXI	CCANNNNNNTGG	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	883, 931
BtsIMutI	CAGTG	3 cut(s)	429, 891, 892
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	149, 465
Csp6I	GTAC	4 cut(s)	578, 723, 803, 873
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	9 cut(s)	91, 173, 190, 221, 286, 437, 789, 839, 863
CviKI_1	RGCY	9 cut(s)	91, 173, 190, 221, 286, 437, 789, 839, 863
CviQI	GTAC	4 cut(s)	578, 723, 803, 873
DdeI	CTNAG	3 cut(s)	85, 449, 894
DpnI	GATC	2 cut(s)	383, 673
DpnII	GATC	2 cut(s)	381, 671
DraI	TTTAAA	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	149, 465
Eco57I	CTGAAG	2 cut(s)	174, 453
EcoRII	CCWGG	2 cut(s)	274, 622
FaeI	CATG	1 cut(s)	293
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	1 cut(s)	289
FauNDI	CATATG	1 cut(s)	561
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	890
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	2 cut(s)	258, 587
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	74
HapII	CCGG	1 cut(s)	539
Hin1II	CATG	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HinfI	GANTC	3 cut(s)	112, 161, 279
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	4 cut(s)	152, 337, 491, 911
Hpy166II	GTNNAC	4 cut(s)	136, 578, 811, 852
Hpy188III	TCNNGA	2 cut(s)	16, 258
Hpy8I	GTNNAC	4 cut(s)	136, 578, 811, 852
HpyAV	CCTTC	3 cut(s)	149, 566, 790
HpyCH4III	ACNGT	2 cut(s)	140, 887
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	5 cut(s)	194, 207, 338, 377, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	3 cut(s)	85, 449, 894
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	381, 671
LmnI	GCTCC	3 cut(s)	79, 187, 291
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	133, 739
MaeI	CTAG	2 cut(s)	258, 587
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	4 cut(s)	223, 425, 479, 887
MalI	GATC	2 cut(s)	383, 673
MboI	GATC	2 cut(s)	381, 671
MboII	GAAGA	7 cut(s)	71, 112, 667, 700, 752, 812, 923
MfeI	CAATTG	1 cut(s)	385
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	6 cut(s)	27, 103, 369, 385, 609, 783
MnlI	CCTC	7 cut(s)	49, 70, 316, 406, 853, 889, 916
MseI	TTAA	1 cut(s)	495
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	3 cut(s)	276, 539, 624
MunI	CAATTG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	276, 624
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	539
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	2 cut(s)	381, 671
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	3 cut(s)	189, 287, 466
NmuCI	GTSAC	3 cut(s)	425, 479, 887
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	112, 161, 279
PkrI	GCNGC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	274, 622
PspGI	CCWGG	2 cut(s)	274, 622
PspN4I	GGNNCC	3 cut(s)	189, 287, 466
PspPI	GGNCC	2 cut(s)	149, 465
PstI	CTGCAG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	671
RsaI	GTAC	4 cut(s)	579, 724, 804, 874
RsaNI	GTAC	4 cut(s)	578, 723, 803, 873
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	381, 671
Sau96I	GGNCC	2 cut(s)	149, 465
ScrFI	CCNGG	3 cut(s)	276, 539, 624
SduI	GDGCHC	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	133, 739
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	149, 465
Sse9I	AATT	6 cut(s)	27, 103, 369, 385, 609, 783
SspMI	CTAG	2 cut(s)	258, 587
StyD4I	CCNGG	3 cut(s)	274, 537, 622
TaaI	ACNGT	2 cut(s)	140, 887
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	1 cut(s)	501
TasI	AATT	6 cut(s)	27, 103, 369, 385, 609, 783
TatI	WGTACW	1 cut(s)	722
TfiI	GAWTC	3 cut(s)	112, 161, 279
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	3 cut(s)	436, 892, 898
TseFI	GTSAC	3 cut(s)	425, 479, 887
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	3 cut(s)	425, 479, 887
TspDTI	ATGAA	8 cut(s)	113, 125, 183, 238, 548, 585, 795, 894
TspGWI	ACGGA	3 cut(s)	620, 813, 890
TspRI	CASTG	3 cut(s)	436, 892, 898
VpaK11BI	GGWCC	2 cut(s)	149, 465
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	257
XspI	CTAG	2 cut(s)	258, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.