Rroxscaffold_7G00179780

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001850
Physical Location & Seq
Reverse (-)
19269452 .. 19276912
7461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179780.1

Sequence Viewer

Length: 855 bp
ATGTGTCGTTCAAATGTGTTTAACATTCAAAAGCCTACTATTGGTAATGCACCAAGTAAATGTTTTTGTGTAGCAGCTACTGATCTGCCATGCCCAAATTCTGTACGAGATGGATTCGGTTCTAGTTCAGGTAGTGCAATGACTAAACGTTCTCGTGTGCAAACTACTGATCAACCATGCCAAAATTCTGTAGAAGATGGACTCAATTCTACTACTGGTACCACTACGAAAGAACTACTACTGATCCCAACTAACTGTTTGATATTTCATAATAATTTTCAGATTCGTTCAGAGAAGAATGCAATAAATAAGTCAAAGTTGACACATCACCACAAAGATGGGTCAAAGTCATTTATGTCTCACCAAAAGCAAATTGCAGCACAGAATAGACAGATGCAAGGTGCAATTGATTGCTTTGAAACAGAGTACAAAAGCACTAACAAAAGGTTGGGATCGGACTTGGGAGCAAAAGCAAAGTGGCCAAAGCACTCATCACGTGTCAACCCTCGTGGCCATCATACTACTCAAGATCAAGCCTCAATCGCCCTTGAGTCAAGTACACCATCGGGGACGACGATAGACAGAGACAGACGCAAGCGGACGGAAGAAATCTCTCCAAAGCTCGAAGTCTCCCAAGCTCGTGAAGAACCATCAAGTTGCCAAATAGCCGGTCTCTTCACCTCACCAACTTCGGACAAACAAGGGAAATCAACTGCAAGCTCGAAGTTGTCAAACTCGAGGAAAATCAACAAGCACCAAGCAAACGTGCCGGTTCATACGCCATCAAAGCCATACTCGCCACGTGACACTTCTCGTGGTTCAAGTCGATCAAGACCAAGCCTCTATAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

284

Amino Acids

31.17

Weight (kDa)

9.85

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 218
AciI CCGC 1 cut(s) 598
AclI AACGTT 1 cut(s) 148
AclWI GGATC 2 cut(s) 238, 460
AcoI YGGCCR 2 cut(s) 479, 511
AcsI RAATTY 2 cut(s) 97, 184
AcvI CACGTG 2 cut(s) 497, 803
AfaI GTAC 4 cut(s) 105, 220, 428, 559
AfiI CCNNNNNNNGG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 496
AgsI TTSAA 4 cut(s) 12, 29, 419, 822
AluBI AGCT 4 cut(s) 77, 622, 638, 720
AluI AGCT 4 cut(s) 77, 622, 638, 720
Alw26I GTCTC 4 cut(s) 363, 579, 634, 677
AlwI GGATC 2 cut(s) 238, 460
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 736
AoxI GGCC 2 cut(s) 479, 511
ApeKI GCWGC 2 cut(s) 74, 377
ApoI RAATTY 2 cut(s) 97, 184
ArsI GACNNNNNNTTYG 2 cut(s) 655, 687
Asp718I GGTACC 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 320, 353, 670, 675
AvaI CYCGRG 1 cut(s) 736
BalI TGGCCA 2 cut(s) 481, 513
BanI GGYRCC 1 cut(s) 218
BauI CACGAG 4 cut(s) 153, 507, 639, 813
BbrPI CACGTG 2 cut(s) 497, 803
BbvI GCAGC 2 cut(s) 86, 389
BccI CCATC 7 cut(s) 104, 191, 332, 522, 571, 658, 790
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 4 cut(s) 363, 579, 634, 677
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 2 cut(s) 189, 844
BisI GCNGC 2 cut(s) 75, 378
BlsI GCNGC 2 cut(s) 76, 379
BmeT110I CYCGRG 1 cut(s) 736
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 510, 569
BsaAI YACGTR 2 cut(s) 497, 803
BsaI GGTCTC 1 cut(s) 677
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 2 cut(s) 668, 769
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 86, 389
BshFI GGCC 2 cut(s) 481, 513
BshNI GGYRCC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 736
BsiSI CCGG 2 cut(s) 669, 770
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 4 cut(s) 363, 579, 634, 677
BsmFI GGGAC 1 cut(s) 583
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 481, 513
Bso31I GGTCTC 1 cut(s) 677
BsoBI CYCGRG 1 cut(s) 736
Bsp143I GATC 6 cut(s) 82, 169, 243, 452, 529, 827
BspACI CCGC 1 cut(s) 598
BspANI GGCC 2 cut(s) 481, 513
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 2 cut(s) 238, 460
BspT107I GGYRCC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 144
BsrFI RCCGGY 2 cut(s) 668, 769
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 2 cut(s) 668, 769
BssMI GATC 6 cut(s) 82, 169, 243, 452, 529, 827
BssSI CACGAG 4 cut(s) 153, 507, 639, 813
Bst2BI CACGAG 4 cut(s) 153, 507, 639, 813
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 680
BstBAI YACGTR 2 cut(s) 497, 803
BstC8I GCNNGC 2 cut(s) 596, 718
BstKTI GATC 6 cut(s) 85, 172, 246, 455, 532, 830
BstMAI GTCTC 4 cut(s) 363, 579, 634, 677
BstMBI GATC 6 cut(s) 82, 169, 243, 452, 529, 827
BstMWI GCNNNNNNNGC 4 cut(s) 542, 787, 796, 846
BstSFI CTRYAG 2 cut(s) 189, 844
BstV1I GCAGC 2 cut(s) 86, 389
BstXI CCANNNNNNTGG 1 cut(s) 338
BsuRI GGCC 2 cut(s) 481, 513
Cac8I GCNNGC 2 cut(s) 596, 718
CaiI CAGNNNCTG 1 cut(s) 80
Cfr10I RCCGGY 2 cut(s) 668, 769
CseI GACGC 1 cut(s) 600
Csp6I GTAC 4 cut(s) 104, 219, 427, 558
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviAII CATG 2 cut(s) 90, 177
CviQI GTAC 4 cut(s) 104, 219, 427, 558
DpnI GATC 6 cut(s) 84, 171, 245, 454, 531, 829
DpnII GATC 6 cut(s) 82, 169, 243, 452, 529, 827
EaeI YGGCCR 2 cut(s) 479, 511
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
Eco31I GGTCTC 1 cut(s) 677
Eco72I CACGTG 2 cut(s) 497, 803
Eco88I CYCGRG 1 cut(s) 736
FaeI CATG 2 cut(s) 93, 180
FaiI YATR 8 cut(s) 91, 178, 270, 356, 519, 777, 793, 846
FaqI GGGAC 1 cut(s) 583
FatI CATG 2 cut(s) 89, 176
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 75, 378
Fsp4HI GCNGC 2 cut(s) 75, 378
FspBI CTAG 1 cut(s) 123
GluI GCNGC 2 cut(s) 75, 378
HaeIII GGCC 2 cut(s) 481, 513
HapII CCGG 2 cut(s) 669, 770
HgaI GACGC 1 cut(s) 600
Hin1II CATG 2 cut(s) 93, 180
HincII GTYRAC 2 cut(s) 321, 502
HindII GTYRAC 2 cut(s) 321, 502
HinfI GANTC 4 cut(s) 114, 201, 283, 551
HpaII CCGG 2 cut(s) 669, 770
HphI GGTGA 4 cut(s) 320, 353, 670, 675
Hpy166II GTNNAC 3 cut(s) 321, 502, 560
Hpy188I TCNGA 4 cut(s) 282, 292, 457, 694
Hpy188III TCNNGA 3 cut(s) 527, 641, 831
Hpy8I GTNNAC 3 cut(s) 321, 502, 560
Hpy99I CGWCG 1 cut(s) 577
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 4 cut(s) 148, 496, 765, 802
HpyCH4V TGCA 8 cut(s) 50, 137, 160, 302, 377, 397, 404, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 542, 787, 796, 846
HpySE526I ACGT 4 cut(s) 148, 496, 765, 802
Hsp92II CATG 2 cut(s) 93, 180
KpnI GGTACC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 6 cut(s) 82, 169, 243, 452, 529, 827
LmnI GCTCC 1 cut(s) 464
LpnPI CCDG 4 cut(s) 114, 201, 682, 783
Lsp1109I GCAGC 2 cut(s) 86, 389
LweI GCATC 1 cut(s) 384
MaeI CTAG 1 cut(s) 123
MaeII ACGT 4 cut(s) 148, 496, 765, 802
MaeIII GTNAC 1 cut(s) 803
MalI GATC 6 cut(s) 84, 171, 245, 454, 531, 829
MboI GATC 6 cut(s) 82, 169, 243, 452, 529, 827
MboII GAAGA 5 cut(s) 206, 307, 617, 656, 667
MfeI CAATTG 1 cut(s) 405
MlsI TGGCCA 2 cut(s) 481, 513
MluCI AATT 6 cut(s) 97, 184, 205, 274, 372, 405
MluNI TGGCCA 2 cut(s) 481, 513
MlyI GAGTC 2 cut(s) 195, 560
MnlI CCTC 5 cut(s) 516, 547, 691, 732, 851
Mox20I TGGCCA 2 cut(s) 481, 513
MscI TGGCCA 2 cut(s) 481, 513
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 2 cut(s) 481, 513
MspI CCGG 2 cut(s) 669, 770
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 304
MwoI GCNNNNNNNGC 4 cut(s) 542, 787, 796, 846
NdeII GATC 6 cut(s) 82, 169, 243, 452, 529, 827
NlaIII CATG 2 cut(s) 93, 180
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 803
PaeR7I CTCGAG 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 572
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 114, 283
PkrI GCNGC 2 cut(s) 76, 379
PleI GAGTC 2 cut(s) 195, 559
PmaCI CACGTG 2 cut(s) 497, 803
PmlI CACGTG 2 cut(s) 497, 803
PpsI GAGTC 2 cut(s) 195, 559
Ppu21I YACGTR 2 cut(s) 497, 803
Psp1406I AACGTT 1 cut(s) 148
PspCI CACGTG 2 cut(s) 497, 803
PspN4I GGNNCC 1 cut(s) 220
PspXI VCTCGAGB 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 80
RsaI GTAC 4 cut(s) 105, 220, 428, 559
RsaNI GTAC 4 cut(s) 104, 219, 427, 558
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 75, 378
Sau3AI GATC 6 cut(s) 82, 169, 243, 452, 529, 827
SchI GAGTC 2 cut(s) 195, 560
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 2 cut(s) 189, 844
Sfr274I CTCGAG 1 cut(s) 736
SlaI CTCGAG 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 3 cut(s) 525, 548, 736
SmoI CTYRAG 3 cut(s) 525, 548, 736
Sse9I AATT 6 cut(s) 97, 184, 205, 274, 372, 405
SsiI CCGC 1 cut(s) 598
SspMI CTAG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 4 cut(s) 151, 499, 768, 805
TaqI TCGA 4 cut(s) 624, 722, 737, 826
TasI AATT 6 cut(s) 97, 184, 205, 274, 372, 405
TatI WGTACW 2 cut(s) 426, 557
TfiI GAWTC 2 cut(s) 114, 283
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 2 cut(s) 74, 377
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 2 cut(s) 257, 764
TspGWI ACGGA 1 cut(s) 617
XapI RAATTY 2 cut(s) 97, 184
XhoI CTCGAG 1 cut(s) 736
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.