Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002482.1

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

57943 .. 63369

Gene Structure 5427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002482.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgagcatcggcaccatcgagaccttcgaaggtgtcccctttggcggcaacctgaaccagaaaggccccgcgaaacgaatatatgacctcatgccaaagccggcgtttagaaacctacatgtgagtgtgactgtgactgtgactgtgactgaccttccttttctaaatgtgcagttcgagcatgacacaatggagagacagtatttcaaggacagggcagcacttgaagccgagtttcaacaatcttgtctacctctgcacaatcagatttgtgatatcgtgaatactgttccttatttttggctcaaagctttgaccaacaacaaagtgctacgtgccaagatagagcacgatgaacgagctcttaagtttattatagacatcaagtggtctaaaacggatagccaaagggggtttggtttcaagcttgagctcttctttgacagcaatcctttctttcgaaatcctgtcttaacgaagacttatgacatgattgacaaagatttacccattttaaggaaagcaatagggactgagatagaatggtatagcagaacacgtttgacaccaaatctcaatgagaagaggctttatgagggcactaacaattggccaacgaaatccaaaaccttatggaacaagattatgaaattgggtcaaccatttgagaggtcattccgcatgctgtgtcatggtttgcaaaaagtgcaagctttggaagcaaatagagcagccttggaggcaaataaggaaaaagccgtcattttaatgactcgctatatggatgattcactccagtacgagtatcagaataaagaagaccccagaaggctgttggtctcactcaaagaacgttttggcaacatctgtgactccctacttcctgacctagaagtgagatggcatagccattgcttctgtgatttcaagacagctcttgattacaactcggaagcattttgcattaaatccttaatggaattctgtggaaaggatatcacagatgcgatgatgattgaaaggactctaccttccccatctttgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

349

Amino Acids

40.74

Weight (kDa)

8.31

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	45, 69, 679
AclI	AACGTT	1 cut(s)	853
AcoI	YGGCCR	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	980
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	2 cut(s)	44, 516
AflII	CTTAAG	1 cut(s)	365
AflIII	ACRYGT	2 cut(s)	118, 557
AgsI	TTSAA	6 cut(s)	208, 227, 239, 424, 928, 1019
AluBI	AGCT	6 cut(s)	311, 362, 427, 433, 713, 935
AluI	AGCT	6 cut(s)	311, 362, 427, 433, 713, 935
Alw21I	GWGCWC	3 cut(s)	351, 364, 435
Alw26I	GTCTC	3 cut(s)	14, 190, 844
AoxI	GGCC	2 cut(s)	64, 611
ApeKI	GCWGC	2 cut(s)	218, 731
ApoI	RAATTY	1 cut(s)	980
AspS9I	GGNCC	1 cut(s)	65
AsuII	TTCGAA	2 cut(s)	27, 460
BaeGI	GKGCMC	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	364, 435
BbsI	GAAGAC	2 cut(s)	485, 825
Bbv12I	GWGCWC	3 cut(s)	351, 364, 435
BbvI	GCAGC	2 cut(s)	230, 743
BccI	CCATC	3 cut(s)	23, 894, 1045
BceAI	ACGGC	1 cut(s)	743
BcoDI	GTCTC	3 cut(s)	14, 190, 844
BfaI	CTAG	1 cut(s)	890
BfrI	CTTAAG	1 cut(s)	365
BglI	GCCNNNNNGGC	1 cut(s)	740
BisI	GCNGC	3 cut(s)	46, 219, 732
BlsI	GCNGC	3 cut(s)	47, 220, 733
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	13, 67
BmsI	GCATC	2 cut(s)	15, 994
BpiI	GAAGAC	2 cut(s)	485, 825
BpmI	CTGGAG	1 cut(s)	779
Bpu14I	TTCGAA	2 cut(s)	27, 460
BpuEI	CTTGAG	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	335
BsaI	GGTCTC	2 cut(s)	14, 844
BsaJI	CCNNGG	1 cut(s)	735
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 516
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	796
Bse3DI	GCAATG	1 cut(s)	910
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	2 cut(s)	44, 516
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	796
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	2 cut(s)	230, 743
BsgI	GTGCAG	2 cut(s)	191, 242
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	66, 613
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	3 cut(s)	351, 364, 435
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	2 cut(s)	20, 544
BslI	CCNNNNNNNGG	2 cut(s)	44, 516
BsmAI	GTCTC	3 cut(s)	14, 190, 844
BsmFI	GGGAC	2 cut(s)	20, 544
BsnI	GGCC	2 cut(s)	66, 613
Bso31I	GGTCTC	2 cut(s)	14, 844
Bsp119I	TTCGAA	2 cut(s)	27, 460
Bsp1286I	GDGCHC	4 cut(s)	351, 364, 435, 602
BspACI	CCGC	3 cut(s)	45, 69, 679
BspANI	GGCC	2 cut(s)	66, 613
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	13, 67
BspQI	GCTCTTC	1 cut(s)	440
BspT104I	TTCGAA	2 cut(s)	27, 460
BspT107I	GGYRCC	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	365
BspTNI	GGTCTC	2 cut(s)	14, 844
BsrDI	GCAATG	1 cut(s)	910
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	796
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	735
Bst4CI	ACNGT	5 cut(s)	133, 139, 145, 201, 289
Bst6I	CTCTTC	2 cut(s)	440, 578
BstAFI	CTTAAG	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	706
BstBAI	YACGTR	1 cut(s)	335
BstBI	TTCGAA	2 cut(s)	27, 460
BstC8I	GCNNGC	3 cut(s)	102, 683, 711
BstDEI	CTNAG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	1 cut(s)	71
BstMAI	GTCTC	3 cut(s)	14, 190, 844
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 227, 706, 719, 728, 740
BstNSI	RCATGY	2 cut(s)	122, 685
BstSLI	GKGCMC	1 cut(s)	602
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	230, 743
BstV2I	GAAGAC	2 cut(s)	485, 825
BsuRI	GGCC	2 cut(s)	66, 613
BtgZI	GCGATG	1 cut(s)	1022
BtsCI	GGATG	1 cut(s)	790
Cac8I	GCNNGC	3 cut(s)	102, 683, 711
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	6 cut(s)	91, 119, 182, 490, 682, 692
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	611
Eam1104I	CTCTTC	2 cut(s)	440, 578
EarI	CTCTTC	2 cut(s)	440, 578
Ecl136II	GAGCTC	2 cut(s)	362, 433
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	2 cut(s)	364, 435
Eco31I	GGTCTC	2 cut(s)	14, 844
Eco32I	GATATC	2 cut(s)	277, 997
Eco53kI	GAGCTC	2 cut(s)	362, 433
EcoICRI	GAGCTC	2 cut(s)	362, 433
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	980
EcoRV	GATATC	2 cut(s)	277, 997
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	2 cut(s)	364, 435
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	6 cut(s)	94, 122, 185, 493, 685, 695
FaqI	GGGAC	2 cut(s)	20, 544
FatI	CATG	6 cut(s)	90, 118, 181, 489, 681, 691
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	46, 219, 732
FokI	GGATG	1 cut(s)	797
FriOI	GRGCYC	2 cut(s)	364, 435
Fsp4HI	GCNGC	3 cut(s)	46, 219, 732
FspBI	CTAG	1 cut(s)	890
GluI	GCNGC	3 cut(s)	46, 219, 732
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	2 cut(s)	66, 613
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	6 cut(s)	94, 122, 185, 493, 685, 695
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HindIII	AAGCTT	3 cut(s)	309, 425, 711
HinfI	GANTC	4 cut(s)	772, 788, 872, 1024
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	251, 659
Hpy188I	TCNGA	3 cut(s)	267, 810, 952
Hpy188III	TCNNGA	5 cut(s)	19, 280, 884, 928, 938
Hpy8I	GTNNAC	2 cut(s)	251, 659
HpyAV	CCTTC	5 cut(s)	23, 34, 164, 822, 1041
HpyCH4III	ACNGT	5 cut(s)	133, 139, 145, 201, 289
HpyCH4IV	ACGT	3 cut(s)	334, 559, 853
HpyCH4V	TGCA	5 cut(s)	172, 259, 700, 709, 963
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 227, 706, 719, 728, 740
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	3 cut(s)	334, 559, 853
Hsp92II	CATG	6 cut(s)	94, 122, 185, 493, 685, 695
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
LguI	GCTCTTC	1 cut(s)	440
LpnPI	CCDG	8 cut(s)	65, 71, 114, 199, 480, 809, 838, 897
Lsp1109I	GCAGC	2 cut(s)	230, 743
LweI	GCATC	2 cut(s)	15, 994
MaeI	CTAG	1 cut(s)	890
MaeII	ACGT	3 cut(s)	334, 559, 853
MaeIII	GTNAC	5 cut(s)	127, 133, 139, 145, 869
MboII	GAAGA	4 cut(s)	427, 490, 595, 830
MfeI	CAATTG	1 cut(s)	607
MhlI	GDGCHC	4 cut(s)	351, 364, 435, 602
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	3 cut(s)	607, 650, 980
MluNI	TGGCCA	1 cut(s)	613
MlyI	GAGTC	3 cut(s)	766, 866, 1018
MnlI	CCTC	6 cut(s)	98, 264, 579, 589, 663, 733
Mox20I	TGGCCA	1 cut(s)	613
MroNI	GCCGGC	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	6 cut(s)	366, 473, 515, 767, 966, 974
MslI	CAYNNNNRTG	2 cut(s)	123, 767
Msp20I	TGGCCA	1 cut(s)	613
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	607
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	6 cut(s)	178, 227, 706, 719, 728, 740
NaeI	GCCGGC	1 cut(s)	102
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	6 cut(s)	94, 122, 185, 493, 685, 695
NlaIV	GGNNCC	2 cut(s)	13, 67
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	5 cut(s)	127, 133, 139, 145, 869
NspI	RCATGY	2 cut(s)	122, 685
NspV	TTCGAA	2 cut(s)	27, 460
PaeI	GCATGC	1 cut(s)	685
PciI	ACATGT	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 24
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	788
PkrI	GCNGC	3 cut(s)	47, 220, 733
PleI	GAGTC	3 cut(s)	766, 866, 1018
PpsI	GAGTC	3 cut(s)	766, 866, 1018
Ppu21I	YACGTR	1 cut(s)	335
PscI	ACATGT	1 cut(s)	118
Psp124BI	GAGCTC	2 cut(s)	364, 435
Psp1406I	AACGTT	1 cut(s)	853
PspN4I	GGNNCC	2 cut(s)	13, 67
PspPI	GGNCC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	2 cut(s)	123, 767
SacI	GAGCTC	2 cut(s)	364, 435
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	6 cut(s)	366, 473, 515, 767, 966, 974
SatI	GCNGC	3 cut(s)	46, 219, 732
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	3 cut(s)	766, 866, 1018
SduI	GDGCHC	4 cut(s)	351, 364, 435, 602
SfaNI	GCATC	2 cut(s)	15, 994
SfuI	TTCGAA	2 cut(s)	27, 460
SmiMI	CAYNNNNRTG	2 cut(s)	123, 767
SmlI	CTYRAG	2 cut(s)	365, 428
SmoI	CTYRAG	2 cut(s)	365, 428
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	3 cut(s)	607, 650, 980
SsiI	CCGC	3 cut(s)	45, 69, 679
SspMI	CTAG	1 cut(s)	890
SstI	GAGCTC	2 cut(s)	364, 435
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	5 cut(s)	133, 139, 145, 201, 289
TaiI	ACGT	3 cut(s)	337, 562, 856
TaqI	TCGA	4 cut(s)	18, 27, 177, 460
TasI	AATT	3 cut(s)	607, 650, 980
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	6 cut(s)	366, 473, 515, 767, 966, 974
Tru9I	TTAA	6 cut(s)	366, 473, 515, 767, 966, 974
TseFI	GTSAC	5 cut(s)	127, 133, 139, 145, 869
TseI	GCWGC	2 cut(s)	218, 731
Tsp45I	GTSAC	5 cut(s)	127, 133, 139, 145, 869
TspDTI	ATGAA	2 cut(s)	369, 662
TspGWI	ACGGA	1 cut(s)	413
Vha464I	CTTAAG	1 cut(s)	365
XapI	RAATTY	1 cut(s)	980
XceI	RCATGY	2 cut(s)	122, 685
XcmI	CCANNNNNNNNNTGG	2 cut(s)	413, 832
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.