Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

22378270 .. 22382780

Gene Structure 4511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCGGTGATTAGAAGAGAGGACGACGACGGACAAAGGGACGCAAGCGAGAAGGAAGAAACCTCTCCAAAGCTCGAAGTCTCCCAACCTCGCGAAGAACCATCAAGCTGCCAAATAGCCGGTCTCTTCACCTCACCAACTTCGGACAAACAAGGAAATCACCTGCAAGCTCGAGAGGTTGTTAAACTCGCGGAAAATCAACAAGCACCAAGCAAATGTGTCGATACATCCGCCATCAAAGCCATACTCGCCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.27

Weight (kDa)

4.91

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	171
AccII	CGCG	2 cut(s)	93, 191
AciI	CCGC	3 cut(s)	5, 191, 231
AcvI	CACGTG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	73, 108, 170
AluI	AGCT	3 cut(s)	73, 108, 170
Alw26I	GTCTC	2 cut(s)	85, 128
Ama87I	CYCGRG	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	108
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AsuHPI	GGTGA	4 cut(s)	19, 121, 126, 152
AvaI	CYCGRG	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	109, 242
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BcoDI	GTCTC	2 cut(s)	85, 128
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	119
BseGI	GGATG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	95
Bsh1236I	CGCG	2 cut(s)	93, 191
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	2 cut(s)	85, 128
BsmFI	GGGAC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	171
Bsp68I	TCGCGA	1 cut(s)	93
BspACI	CCGC	3 cut(s)	5, 191, 231
BspFNI	CGCG	2 cut(s)	93, 191
BspMI	ACCTGC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
Bst6I	CTCTTC	2 cut(s)	10, 131
BstBAI	YACGTR	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	46, 168
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	2 cut(s)	93, 191
BstMAI	GTCTC	2 cut(s)	85, 128
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 248
BstUI	CGCG	2 cut(s)	93, 191
BstV1I	GCAGC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	227
BtuMI	TCGCGA	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	46, 168
Cfr10I	RCCGGY	1 cut(s)	119
CseI	GACGC	1 cut(s)	50
CviJI	RGCY	5 cut(s)	73, 108, 119, 170, 242
CviKI_1	RGCY	5 cut(s)	73, 108, 119, 170, 242
Eam1104I	CTCTTC	2 cut(s)	10, 131
EarI	CTCTTC	2 cut(s)	10, 131
EciI	GGCGGA	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	128
Eco72I	CACGTG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	171
FaiI	YATR	1 cut(s)	245
FaqI	GGGAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	4 cut(s)	19, 121, 126, 152
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	92, 173
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 248
HpySE526I	ACGT	1 cut(s)	254
LpnPI	CCDG	2 cut(s)	133, 176
Lsp1109I	GCAGC	1 cut(s)	95
MaeII	ACGT	1 cut(s)	254
MboII	GAAGA	4 cut(s)	27, 68, 107, 118
MnlI	CCTC	5 cut(s)	13, 73, 99, 142, 169
MseI	TTAA	1 cut(s)	183
MspI	CCGG	1 cut(s)	120
MvnI	CGCG	2 cut(s)	93, 191
MwoI	GCNNNNNNNGC	2 cut(s)	239, 248
NruI	TCGCGA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	171
PaqCI	CACCTGC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	110
PmaCI	CACGTG	1 cut(s)	255
PmlI	CACGTG	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	255
PspCI	CACGTG	1 cut(s)	255
RruI	TCGCGA	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	109
SetI	ASST	9 cut(s)	65, 75, 91, 110, 134, 165, 172, 180, 257
Sfr274I	CTCGAG	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SsiI	CCGC	3 cut(s)	5, 191, 231
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	3 cut(s)	75, 172, 222
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	45
XhoI	CTCGAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.