Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

39632553 .. 39641049

Gene Structure 8497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG233100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCATCGGCGCCATCGAGACCTTCGAAGGTGTCCCCTTTGGCGGCAACCTGAACCAGAAAGGCCCCGCGAAACGAATATATGACCCCATGCCAAAGCCCGCGTTTAGAGACCGTATTGAGAAACTCAGATTGTTGCAGTTCGAGCATGACACAATGGAGAGACAGTATTTCAAGGACAGGGCAGCACTTGAAGCCGAGTTTCAACAATCTTGTCTACCTCTGCACAATCAGATTTGTGATATCGTGAATACTGTTCCTTATTTTTGGCTCAAAGCTTTGACCAACAACAAAGTGCTACGTGCCAAGCGATGCAGTATTGTAAACGGTGATGCTGGACCTGAAGGAGATTCTAATGAAGCTGCCACAAAGCAGGAGCCTGCAACCTGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

131

Amino Acids

14.79

Weight (kDa)

6.13

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	217
AccII	CGCG	2 cut(s)	71, 104
AciI	CCGC	3 cut(s)	45, 69, 102
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	175, 194, 206
AluBI	AGCT	2 cut(s)	278, 362
AluI	AGCT	2 cut(s)	278, 362
Alw26I	GTCTC	3 cut(s)	14, 105, 157
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	185, 362
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	65, 338
AsuHPI	GGTGA	1 cut(s)	341
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	197, 349
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	3 cut(s)	14, 105, 157
BfoI	RGCGCY	1 cut(s)	15
BisI	GCNGC	3 cut(s)	46, 186, 363
BlsI	GCNGC	3 cut(s)	47, 187, 364
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	65, 338
BmiI	GGNNCC	3 cut(s)	13, 67, 378
BmsI	GCATC	3 cut(s)	15, 302, 322
Bpu14I	TTCGAA	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	2 cut(s)	14, 105
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	197, 349
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	2 cut(s)	71, 104
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	14, 105, 157
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	2 cut(s)	14, 105
Bsp119I	TTCGAA	1 cut(s)	27
BspACI	CCGC	3 cut(s)	45, 69, 102
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	2 cut(s)	71, 104
BspLI	GGNNCC	3 cut(s)	13, 67, 378
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	2 cut(s)	14, 105
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	4 cut(s)	116, 168, 256, 329
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	102, 381
BstDEI	CTNAG	1 cut(s)	128
BstFNI	CGCG	2 cut(s)	71, 104
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstMAI	GTCTC	3 cut(s)	14, 105, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 194
BstUI	CGCG	2 cut(s)	71, 104
BstV1I	GCAGC	2 cut(s)	197, 349
BsuRI	GGCC	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	102, 381
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	65, 338
CviAII	CATG	2 cut(s)	91, 149
CviJI	RGCY	7 cut(s)	66, 100, 197, 271, 278, 362, 379
CviKI_1	RGCY	7 cut(s)	66, 100, 197, 271, 278, 362, 379
DdeI	CTNAG	1 cut(s)	128
DinI	GGCGCC	1 cut(s)	13
Eco31I	GGTCTC	2 cut(s)	14, 105
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	244
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
FaeI	CATG	2 cut(s)	94, 152
FaiI	YATR	4 cut(s)	82, 84, 92, 150
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	90, 148
FauI	CCCGC	2 cut(s)	76, 109
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	46, 186, 363
Fsp4HI	GCNGC	3 cut(s)	46, 186, 363
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	3 cut(s)	46, 186, 363
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	94, 152
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	218, 325
Hpy188I	TCNGA	2 cut(s)	131, 234
Hpy188III	TCNNGA	2 cut(s)	19, 247
Hpy8I	GTNNAC	2 cut(s)	218, 325
HpyAV	CCTTC	3 cut(s)	23, 34, 338
HpyCH4III	ACNGT	4 cut(s)	116, 168, 256, 329
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	4 cut(s)	139, 226, 315, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 194
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	301
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	94, 152
HspAI	GCGC	1 cut(s)	12
KasI	GGCGCC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	6 cut(s)	65, 71, 166, 321, 354, 359
Lsp1109I	GCAGC	2 cut(s)	197, 349
LweI	GCATC	3 cut(s)	15, 302, 322
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	389
Mly113I	GGCGCC	1 cut(s)	12
MnlI	CCTC	1 cut(s)	231
MvnI	CGCG	2 cut(s)	71, 104
MwoI	GCNNNNNNNGC	2 cut(s)	145, 194
NarI	GGCGCC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	94, 152
NlaIV	GGNNCC	3 cut(s)	13, 67, 378
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	389
NspV	TTCGAA	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 24, 307
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	47, 187, 364
PluTI	GGCGCC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	13, 67, 378
PspPI	GGNCC	2 cut(s)	65, 338
SatI	GCNGC	3 cut(s)	46, 186, 363
Sau96I	GGNCC	2 cut(s)	65, 338
SetI	ASST	9 cut(s)	26, 34, 54, 223, 280, 304, 343, 364, 389
SfaNI	GCATC	3 cut(s)	15, 302, 322
SfoI	GGCGCC	1 cut(s)	13
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	1 cut(s)	338
SsiI	CCGC	3 cut(s)	45, 69, 102
SspDI	GGCGCC	1 cut(s)	11
TaaI	ACNGT	4 cut(s)	116, 168, 256, 329
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	18, 27, 144
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	2 cut(s)	185, 362
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.