Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

43369958 .. 43373432

Gene Structure 3475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGCATCGGCGCCATCGAGACCTTCGAAGGTGTCCCCTTTGGCGGCATCCTGAACCAGAAAGGCCCCGCGAAACGAATATATGACCCCATGCCAAAGCCCGCGTTTAGAAACCGTATTGCAATTGAGAAACTCAGATTGTTGCAGTTCGAGCATGACACAATGGAGAGACAGTATTTCAAGGACAGGGCAGCACTTGAAGTCGAGTTTCAACAATCTTGTCTACCTCTGCACAATCAGATTTGTGATATCGTGAATACTGTTCCTTATTTTTGGCTCAAAGCTTTGACCAACAGCAAAGTGCTACGTGCCAAGATTACTAAGCACGATGAACTAGCTCTTAAGTTTCTTAGAGACATCAAGTGGTCTAAAACAGATAGCCAAAGGGGGTTTGGTTTCAAGCTTGAGTTCTTCTTTGACAGCAATCCTTTCTTTCGAAATCCTGTCTTAACAAAGACTTATGACATGATTGACAAAGATTTACCCATTTTAAGAAAAGCAATAGGAGGAAACTTGATAAACTGGAGGAAGAGTTTTTCAAAAAGAGAGGAGCACGTAGAGCCAAGTATGAAGAATTGTATGAATCTCTCCAGAACAAGCAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

202

Amino Acids

23.68

Weight (kDa)

9.58

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	86 - 177	2.6e-25	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	2 cut(s)	71, 104
AciI	CCGC	3 cut(s)	45, 69, 102
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	5 cut(s)	181, 200, 212, 400, 540
AluBI	AGCT	3 cut(s)	284, 338, 403
AluI	AGCT	3 cut(s)	284, 338, 403
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	14, 163, 348
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	65
AsuII	TTCGAA	2 cut(s)	27, 436
BanI	GGYRCC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	3 cut(s)	14, 163, 348
BfaI	CTAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	46, 192
BlsI	GCNGC	2 cut(s)	47, 193
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	13, 67
BmsI	GCATC	2 cut(s)	15, 57
BpmI	CTGGAG	2 cut(s)	544, 574
Bpu14I	TTCGAA	2 cut(s)	27, 436
BpuEI	CTTGAG	1 cut(s)	425
BsaAI	YACGTR	2 cut(s)	308, 556
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	14
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 517, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	527
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	71, 104
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	14, 163, 348
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	2 cut(s)	27, 436
Bsp1286I	GDGCHC	1 cut(s)	555
BspACI	CCGC	3 cut(s)	45, 69, 102
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	71, 104
BspLI	GGNNCC	2 cut(s)	13, 67
BspT104I	TTCGAA	2 cut(s)	27, 436
BspT107I	GGYRCC	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	527
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	116, 174, 262
Bst6I	CTCTTC	1 cut(s)	524
BstACI	GRCGYC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	341
BstBAI	YACGTR	2 cut(s)	308, 556
BstBI	TTCGAA	2 cut(s)	27, 436
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	3 cut(s)	134, 321, 350
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	2 cut(s)	71, 104
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstMAI	GTCTC	3 cut(s)	14, 163, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 559
BstUI	CGCG	2 cut(s)	71, 104
BstV1I	GCAGC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	3 cut(s)	91, 155, 466
CviJI	RGCY	8 cut(s)	66, 100, 277, 284, 338, 381, 403, 562
CviKI_1	RGCY	8 cut(s)	66, 100, 277, 284, 338, 381, 403, 562
DdeI	CTNAG	3 cut(s)	134, 321, 350
DinI	GGCGCC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
FaeI	CATG	3 cut(s)	94, 158, 469
FaiI	YATR	8 cut(s)	82, 84, 92, 156, 462, 467, 569, 581
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	90, 154, 465
FauI	CCCGC	2 cut(s)	76, 109
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	46, 192
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	46, 192
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	46, 192
GsuI	CTGGAG	2 cut(s)	544, 574
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	94, 158, 469
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	282, 401
HinfI	GANTC	1 cut(s)	583
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	137, 240
Hpy188III	TCNNGA	4 cut(s)	19, 52, 253, 591
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	23, 34
HpyCH4III	ACNGT	3 cut(s)	116, 174, 262
HpyCH4IV	ACGT	2 cut(s)	307, 555
HpyCH4V	TGCA	3 cut(s)	122, 145, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 559
HpyF3I	CTNAG	3 cut(s)	134, 321, 350
HpySE526I	ACGT	2 cut(s)	307, 555
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	94, 158, 469
HspAI	GCGC	1 cut(s)	12
KasI	GGCGCC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	550
LpnPI	CCDG	6 cut(s)	65, 71, 172, 456, 508, 604
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	2 cut(s)	15, 57
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	2 cut(s)	307, 555
MboII	GAAGA	3 cut(s)	403, 541, 583
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	3 cut(s)	123, 574, 601
Mly113I	GGCGCC	1 cut(s)	12
MnlI	CCTC	4 cut(s)	237, 500, 519, 541
MseI	TTAA	3 cut(s)	342, 449, 491
MspCI	CTTAAG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	123
MvnI	CGCG	2 cut(s)	71, 104
MwoI	GCNNNNNNNGC	2 cut(s)	151, 559
NarI	GGCGCC	1 cut(s)	12
NlaIII	CATG	3 cut(s)	94, 158, 469
NlaIV	GGNNCC	2 cut(s)	13, 67
NspV	TTCGAA	2 cut(s)	27, 436
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 24
PfeI	GAWTC	1 cut(s)	583
PkrI	GCNGC	2 cut(s)	47, 193
PluTI	GGCGCC	1 cut(s)	15
Ppu21I	YACGTR	2 cut(s)	308, 556
PspN4I	GGNNCC	2 cut(s)	13, 67
PspPI	GGNCC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	342, 449, 491
SatI	GCNGC	2 cut(s)	46, 192
Sau96I	GGNCC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	8 cut(s)	26, 34, 229, 286, 310, 340, 405, 558
SfaNI	GCATC	2 cut(s)	15, 57
SfoI	GGCGCC	1 cut(s)	13
SfuI	TTCGAA	2 cut(s)	27, 436
SmlI	CTYRAG	2 cut(s)	341, 404
SmoI	CTYRAG	2 cut(s)	341, 404
Sse9I	AATT	3 cut(s)	123, 574, 601
SsiI	CCGC	3 cut(s)	45, 69, 102
SspDI	GGCGCC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	335
TaaI	ACNGT	3 cut(s)	116, 174, 262
TaiI	ACGT	2 cut(s)	310, 558
TaqI	TCGA	5 cut(s)	18, 27, 150, 204, 436
TasI	AATT	3 cut(s)	123, 574, 601
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	3 cut(s)	342, 449, 491
Tru9I	TTAA	3 cut(s)	342, 449, 491
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	345, 584, 596
Vha464I	CTTAAG	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.