Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

23246590 .. 23254852

Gene Structure 8263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGATCACACCTCTTCTGGAAGCACATGTTTGGACAGCGCATGAAGCCGCGTCTCTTGTCACTCGAAGACACCCACTAGCTTTGAGGAATATGATTAAAATGAATCGGCTGCGCGCCATAGTGAACCCAAAAAACTCAATCTTCCCGAAGAATGAAACCTCATACTCCATCTTCCCCTCCCCTCAACCCAAAAACTCTTCTCTAAAGACTCATCTAAATCTCAAAAACCTCATACGCAGTACTCACCTTCGTCTCTCACTCTCTGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAAGCTCAATGAGAAGAGGCTTTATGTGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCGATGGACCAACTTCTCGCCACCTCTCTCCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

141

Amino Acids

16.26

Weight (kDa)

10.98

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	53, 117
AciI	CCGC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	244
AflIII	ACRYGT	2 cut(s)	28, 296
AgsI	TTSAA	1 cut(s)	364
AluBI	AGCT	2 cut(s)	83, 313
AluI	AGCT	2 cut(s)	83, 313
Alw26I	GTCTC	2 cut(s)	60, 260
ApeKI	GCWGC	1 cut(s)	112
AspLEI	GCGC	3 cut(s)	43, 117, 119
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	2 cut(s)	179, 386
BcoDI	GTCTC	2 cut(s)	60, 260
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	51, 113
BlsI	GCNGC	2 cut(s)	52, 114
BmcAI	AGTACT	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	264
BsePI	GCGCGC	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	53, 117
BslFI	GGGAC	2 cut(s)	283, 371
BsmAI	GTCTC	2 cut(s)	60, 260
BsmBI	CGTCTC	2 cut(s)	60, 260
BsmFI	GGGAC	2 cut(s)	283, 371
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	53, 117
BssECI	CCNNGG	1 cut(s)	419
BssHII	GCGCGC	1 cut(s)	115
BssMI	GATC	1 cut(s)	6
Bst6I	CTCTTC	3 cut(s)	21, 205, 317
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	2 cut(s)	53, 117
BstHHI	GCGC	3 cut(s)	43, 117, 119
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	60, 260
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	2 cut(s)	53, 117
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	3 cut(s)	43, 117, 119
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	243
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	2 cut(s)	29, 44
CviJI	RGCY	5 cut(s)	50, 83, 112, 313, 328
CviKI_1	RGCY	5 cut(s)	50, 83, 112, 313, 328
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	21, 205, 317
EarI	CTCTTC	3 cut(s)	21, 205, 317
Eco47I	GGWCC	1 cut(s)	395
Esp3I	CGTCTC	2 cut(s)	60, 260
FaeI	CATG	2 cut(s)	32, 47
FaiI	YATR	8 cut(s)	30, 45, 95, 122, 166, 236, 288, 333
FaqI	GGGAC	2 cut(s)	283, 371
FatI	CATG	2 cut(s)	28, 43
Fnu4HI	GCNGC	2 cut(s)	51, 113
Fsp4HI	GCNGC	2 cut(s)	51, 113
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	3 cut(s)	42, 116, 118
GluI	GCNGC	2 cut(s)	51, 113
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	3 cut(s)	43, 117, 119
Hin1II	CATG	2 cut(s)	32, 47
Hin6I	GCGC	3 cut(s)	41, 115, 117
HinP1I	GCGC	3 cut(s)	41, 115, 117
HinfI	GANTC	2 cut(s)	106, 211
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	127, 377
Hpy188III	TCNNGA	2 cut(s)	20, 148
Hpy8I	GTNNAC	2 cut(s)	127, 377
HpyAV	CCTTC	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	32, 47
HspAI	GCGC	3 cut(s)	41, 115, 117
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	2 cut(s)	5, 252
Lsp1109I	GCAGC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	8 cut(s)	8, 81, 136, 163, 166, 192, 334, 352
MfeI	CAATTG	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	8 cut(s)	24, 81, 172, 190, 195, 242, 318, 422
MseI	TTAA	1 cut(s)	99
MunI	CAATTG	1 cut(s)	346
MvnI	CGCG	2 cut(s)	53, 117
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	2 cut(s)	32, 47
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	32
PauI	GCGCGC	1 cut(s)	115
PciI	ACATGT	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	52, 114
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	395
PteI	GCGCGC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	51, 113
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	8 cut(s)	16, 85, 164, 234, 252, 301, 315, 414
SinI	GGWCC	1 cut(s)	395
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	80
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	346
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	60, 119, 171
VpaK11BI	GGWCC	1 cut(s)	395
XceI	RCATGY	1 cut(s)	32
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XspI	CTAG	1 cut(s)	80
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.