Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

41797671 .. 41824816

Gene Structure 27146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG219300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAATCCACCCAATCTCGGAGGCCAAAGAGCAGAGCCCCTTCGGCGCGTTAACCGCCGTAGAGTTCTACTCCCGTCACTCCGTCTCTCACGGCTCCGACTACGTCACCAACCCCGGAAGCTTCAAGCTCTTCACTCAGTAGTGGACCCCACTCCCTCCAACCGAGGCCCTCGGCGTCCTCGCCATAGTTCACGGCTTCACCAGCGAGACCAGCTCTTTACGGACCTTATTTGCAATTTGGAAAATAGAGAAACAGAGATAAGGAAAGAGAAAGGGGAATGTGGAGATATGATGGAAATTGAAGAATGCGAGACTTTGACCCCCTTGAACCTACCAGAACAAGAAAAAGAATATATGGTTAATGCTTATTCCTGCCTCAAAGAAAGTTTGGAGAGGGGTGGAACTTTAATAAGAGAAAGCTTGCCCAGATTTAGCTCAGGCCGTTGGAAGAGCCCTCTTCAGGGCACATGTAGAGGGTCAACTGAAGGATTAGCTGGAGACGACGAAGAAGGATTGACAAATAAACGATTGGCTTTTCGTATTTCTGGGTCTGTCTTAACAAAGACTTATGACATGATTGACGAGGATTTACCCATTTTAAGAAAAGCAATAGGGACTGATCTAGAATGGTATAGTAGAACACGTTTGACACCAAAGCTCAATGAGAAGCGGCTTTACGAGGGCACTAACAATTGGGGAAGTTTCTTCAACTTCTTCAGTCCACCCGAAGTCCCCAGAGTTATAGATGGAAAAGCGGTTTCTGAACTTATTAGGAGGATGATTCCAAGTCATACTAGTCAACCATTCGAGAGGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAATGGACCAACTTCTGCCACCTCTCTCCTCGGTAGGCAGTGCTAGTGAGCGCTTTCAATCAAATCGTGCTCAAGTGAGGGAGTCAAATCAAGATTGGTCTAAGCTTCAAAAAATGAACACTTTCACCAAAGCTGAGGAAGTGAGGAGCCGTATTGCTTCAGGCACCACACACCAGTATGAAATGCAAAGATTGAAACAGGTACCGGTGGAAGGTTCAGGATATTTAAATTCTCGTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

362

Amino Acids

41.65

Weight (kDa)

9.54

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	184 - 247	8.4e-06	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1045
AccB1I	GGYRCC	2 cut(s)	1007, 1045
AccII	CGCG	1 cut(s)	48
AciI	CCGC	3 cut(s)	55, 670, 755
AcsI	RAATTY	1 cut(s)	1072
AcuI	CTGAAG	4 cut(s)	443, 504, 700, 987
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	1047
AfeI	AGCGCT	1 cut(s)	896
AfiI	CCNNNNNNNGG	4 cut(s)	17, 460, 461, 1055
AflIII	ACRYGT	2 cut(s)	467, 641
AgeI	ACCGGT	1 cut(s)	1048
AgsI	TTSAA	7 cut(s)	125, 302, 328, 709, 902, 953, 1039
AhlI	ACTAGT	1 cut(s)	794
AluBI	AGCT	9 cut(s)	121, 128, 214, 420, 435, 494, 658, 949, 977
AluI	AGCT	9 cut(s)	121, 128, 214, 420, 435, 494, 658, 949, 977
Alw21I	GWGCWC	1 cut(s)	916
Alw26I	GTCTC	4 cut(s)	89, 201, 305, 492
Aor51HI	AGCGCT	1 cut(s)	896
AoxI	GGCC	3 cut(s)	22, 166, 439
ApoI	RAATTY	1 cut(s)	1072
AsiGI	ACCGGT	1 cut(s)	1048
Asp700I	GAANNNNTTC	1 cut(s)	965
Asp718I	GGTACC	1 cut(s)	1045
AspLEI	GCGC	2 cut(s)	48, 897
AspS9I	GGNCC	4 cut(s)	145, 167, 223, 850
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	98, 191, 961
AvaII	GGWCC	3 cut(s)	145, 223, 850
BaeGI	GKGCMC	2 cut(s)	467, 686
BanI	GGYRCC	2 cut(s)	1007, 1045
BanII	GRGCYC	2 cut(s)	39, 455
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
Bbv12I	GWGCWC	1 cut(s)	916
BbvCI	CCTCAGC	1 cut(s)	978
BccI	CCATC	2 cut(s)	286, 740
BceAI	ACGGC	5 cut(s)	42, 107, 209, 426, 978
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	4 cut(s)	89, 201, 305, 492
BcuI	ACTAGT	1 cut(s)	794
BfaI	CTAG	3 cut(s)	623, 795, 888
BfoI	RGCGCY	1 cut(s)	898
BglI	GCCNNNNNGGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	671
BlsI	GCNGC	1 cut(s)	672
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	3 cut(s)	145, 223, 850
BmgT120I	GGNCC	4 cut(s)	145, 167, 223, 850
BmiI	GGNNCC	5 cut(s)	95, 147, 992, 1009, 1047
BmrFI	CCNGG	1 cut(s)	115
BplI	GAGNNNNNCTC	4 cut(s)	54, 86, 198, 230
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	2 cut(s)	436, 978
BpuEI	CTTGAG	1 cut(s)	900
BpuMI	CCSGG	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	4 cut(s)	113, 163, 170, 873
BsaWI	WCCGGW	1 cut(s)	1048
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 460, 461, 1055
Bse118I	RCCGGY	1 cut(s)	1048
Bse1I	ACTGG	1 cut(s)	1018
BseDI	CCNNGG	4 cut(s)	113, 163, 170, 873
BseGI	GGATG	1 cut(s)	783
BseLI	CCNNNNNNNGG	4 cut(s)	17, 460, 461, 1055
BseMII	CTCAG	3 cut(s)	150, 450, 969
BseNI	ACTGG	1 cut(s)	1018
BseRI	GAGGAG	2 cut(s)	862, 1003
BseSI	GKGCMC	2 cut(s)	467, 686
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	24, 168, 441
BshNI	GGYRCC	2 cut(s)	1007, 1045
BshTI	ACCGGT	1 cut(s)	1048
BsiHKAI	GWGCWC	1 cut(s)	916
BsiSI	CCGG	2 cut(s)	115, 1049
BslFI	GGGAC	2 cut(s)	628, 716
BslI	CCNNNNNNNGG	4 cut(s)	17, 460, 461, 1055
BsmAI	GTCTC	4 cut(s)	89, 201, 305, 492
BsmBI	CGTCTC	2 cut(s)	89, 492
BsmFI	GGGAC	2 cut(s)	628, 716
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	3 cut(s)	24, 168, 441
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	5 cut(s)	39, 455, 467, 686, 916
Bsp143I	GATC	1 cut(s)	619
BspACI	CCGC	3 cut(s)	55, 670, 755
BspANI	GGCC	3 cut(s)	24, 168, 441
BspCNI	CTCAG	3 cut(s)	149, 449, 970
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	5 cut(s)	95, 147, 992, 1009, 1047
BspQI	GCTCTTC	2 cut(s)	135, 443
BspT107I	GGYRCC	2 cut(s)	1007, 1045
BspTNI	GGTCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	1048
BsrI	ACTGG	1 cut(s)	1018
BssAI	RCCGGY	1 cut(s)	1048
BssECI	CCNNGG	4 cut(s)	113, 163, 170, 873
BssMI	GATC	1 cut(s)	619
BssNI	GRCGYC	1 cut(s)	175
Bst6I	CTCTTC	3 cut(s)	135, 443, 462
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	4 cut(s)	136, 436, 945, 978
BstF5I	GGATG	1 cut(s)	783
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	898
BstHHI	GCGC	2 cut(s)	48, 897
BstKTI	GATC	1 cut(s)	622
BstMAI	GTCTC	4 cut(s)	89, 201, 305, 492
BstMBI	GATC	1 cut(s)	619
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 54, 202, 211
BstNSI	RCATGY	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	113
BstSLI	GKGCMC	2 cut(s)	467, 686
BstUI	CGCG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	24, 168, 441
BtsCI	GGATG	1 cut(s)	783
BtsI	GCAGTG	1 cut(s)	889
BtsIMutI	CAGTG	1 cut(s)	889
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	2 cut(s)	48, 897
Cfr10I	RCCGGY	1 cut(s)	1048
Cfr13I	GGNCC	4 cut(s)	145, 167, 223, 850
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	1046
CspAI	ACCGGT	1 cut(s)	1048
CviAII	CATG	4 cut(s)	468, 574, 823, 833
CviQI	GTAC	1 cut(s)	1046
DdeI	CTNAG	4 cut(s)	136, 436, 945, 978
DpnI	GATC	1 cut(s)	621
DpnII	GATC	1 cut(s)	619
DraI	TTTAAA	1 cut(s)	1071
Eam1104I	CTCTTC	3 cut(s)	135, 443, 462
EarI	CTCTTC	3 cut(s)	135, 443, 462
Eco24I	GRGCYC	2 cut(s)	39, 455
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	145, 223, 850
Eco47III	AGCGCT	1 cut(s)	896
Eco57I	CTGAAG	4 cut(s)	443, 504, 700, 987
EcoO109I	RGGNCCY	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	39, 455
Esp3I	CGTCTC	2 cut(s)	89, 492
FaeI	CATG	4 cut(s)	471, 577, 826, 836
FaqI	GGGAC	2 cut(s)	628, 716
FatI	CATG	4 cut(s)	467, 573, 822, 832
Fnu4HI	GCNGC	1 cut(s)	671
FokI	GGATG	1 cut(s)	790
FriOI	GRGCYC	2 cut(s)	39, 455
Fsp4HI	GCNGC	1 cut(s)	671
FspBI	CTAG	3 cut(s)	623, 795, 888
GlaI	GCGC	2 cut(s)	47, 896
GluI	GCNGC	1 cut(s)	671
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	898
HaeIII	GGCC	3 cut(s)	24, 168, 441
HapII	CCGG	2 cut(s)	115, 1049
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	2 cut(s)	48, 897
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	471, 577, 826, 836
Hin6I	GCGC	2 cut(s)	46, 895
HinP1I	GCGC	2 cut(s)	46, 895
HincII	GTYRAC	3 cut(s)	52, 480, 800
HindII	GTYRAC	3 cut(s)	52, 480, 800
HindIII	AAGCTT	3 cut(s)	119, 418, 947
HinfI	GANTC	3 cut(s)	4, 781, 926
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	115, 1049
HphI	GGTGA	3 cut(s)	98, 191, 961
Hpy166II	GTNNAC	6 cut(s)	52, 145, 191, 480, 722, 800
Hpy188I	TCNGA	4 cut(s)	20, 98, 763, 1084
Hpy188III	TCNNGA	4 cut(s)	623, 808, 935, 1062
Hpy8I	GTNNAC	6 cut(s)	52, 145, 191, 480, 722, 800
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	4 cut(s)	50, 479, 503, 1049
HpyCH4IV	ACGT	2 cut(s)	103, 643
HpyCH4V	TGCA	3 cut(s)	234, 841, 1030
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 54, 202, 211
HpyF3I	CTNAG	4 cut(s)	136, 436, 945, 978
HpySE526I	ACGT	2 cut(s)	103, 643
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	471, 577, 826, 836
HspAI	GCGC	2 cut(s)	46, 895
KpnI	GGTACC	1 cut(s)	1049
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	619
LguI	GCTCTTC	2 cut(s)	135, 443
LmnI	GCTCC	2 cut(s)	99, 990
MaeI	CTAG	3 cut(s)	623, 795, 888
MaeII	ACGT	2 cut(s)	103, 643
MaeIII	GTNAC	2 cut(s)	75, 104
MalI	GATC	1 cut(s)	621
MboI	GATC	1 cut(s)	619
MboII	GAAGA	7 cut(s)	122, 314, 449, 460, 518, 697, 706
MfeI	CAATTG	1 cut(s)	691
MhlI	GDGCHC	5 cut(s)	39, 455, 467, 686, 916
MluCI	AATT	4 cut(s)	235, 297, 691, 1072
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	3 cut(s)	121, 183, 425
MroXI	GAANNNNTTC	1 cut(s)	965
MseI	TTAA	6 cut(s)	51, 360, 407, 557, 599, 1070
MslI	CAYNNNNRTG	1 cut(s)	1020
MspI	CCGG	2 cut(s)	115, 1049
MspR9I	CCNGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	691
Mva1269I	GAATGC	1 cut(s)	311
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	43, 54, 202, 211
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	619
NlaIII	CATG	4 cut(s)	471, 577, 826, 836
NlaIV	GGNNCC	5 cut(s)	95, 147, 992, 1009, 1047
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	75, 104
NspI	RCATGY	1 cut(s)	471
PciI	ACATGT	1 cut(s)	467
PciSI	GCTCTTC	2 cut(s)	135, 443
PctI	GAATGC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	2 cut(s)	4, 781
PflFI	GACNNNGTC	1 cut(s)	102
PinAI	ACCGGT	1 cut(s)	1048
PkrI	GCNGC	1 cut(s)	672
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
PscI	ACATGT	1 cut(s)	467
PspN4I	GGNNCC	5 cut(s)	95, 147, 992, 1009, 1047
PspPI	GGNCC	4 cut(s)	145, 167, 223, 850
PsyI	GACNNNGTC	1 cut(s)	102
RsaI	GTAC	1 cut(s)	1047
RsaNI	GTAC	1 cut(s)	1046
RseI	CAYNNNNRTG	1 cut(s)	1020
SapI	GCTCTTC	2 cut(s)	135, 443
SaqAI	TTAA	6 cut(s)	51, 360, 407, 557, 599, 1070
SatI	GCNGC	1 cut(s)	671
Sau3AI	GATC	1 cut(s)	619
Sau96I	GGNCC	4 cut(s)	145, 167, 223, 850
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	5 cut(s)	39, 455, 467, 686, 916
SinI	GGWCC	3 cut(s)	145, 223, 850
SmiI	ATTTAAAT	1 cut(s)	1071
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SmlI	CTYRAG	1 cut(s)	915
SmoI	CTYRAG	1 cut(s)	915
SpeI	ACTAGT	1 cut(s)	794
Sse9I	AATT	4 cut(s)	235, 297, 691, 1072
SsiI	CCGC	3 cut(s)	55, 670, 755
SspMI	CTAG	3 cut(s)	623, 795, 888
StyD4I	CCNGG	1 cut(s)	113
SwaI	ATTTAAAT	1 cut(s)	1071
TaiI	ACGT	2 cut(s)	106, 646
TaqI	TCGA	1 cut(s)	807
TasI	AATT	4 cut(s)	235, 297, 691, 1072
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	2 cut(s)	4, 781
Tru1I	TTAA	6 cut(s)	51, 360, 407, 557, 599, 1070
Tru9I	TTAA	6 cut(s)	51, 360, 407, 557, 599, 1070
TscAI	CASTG	1 cut(s)	889
TseFI	GTSAC	2 cut(s)	75, 104
Tsp45I	GTSAC	2 cut(s)	75, 104
TspDTI	ATGAA	3 cut(s)	17, 974, 1038
TspGWI	ACGGA	2 cut(s)	71, 236
TspRI	CASTG	1 cut(s)	889
Tth111I	GACNNNGTC	1 cut(s)	102
VpaK11BI	GGWCC	3 cut(s)	145, 223, 850
XapI	RAATTY	1 cut(s)	1072
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	3 cut(s)	623, 795, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.