Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

44786003 .. 44791764

Gene Structure 5762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATCAGCTGGTCTGGACTCTGAAGAAGAGTAGTCGCAAGTCTCTGCTGGTCCAAAACGGCCGGATGTGGTGGCTGGCGGCGGAGAAGTATAGATCTTCTCCTCTGCTCCTGTTGCCTTCTCCACTGCTCCTATTGTTGCTTTTCATATATCTATTTCAAGGATTAGCTGGAGACGACGAAGAAGGATTGACAAATAAACGATTGGCTTTTCGTATTTCTGGGTCTGTCTTAACAAAGACTTATGACATGATTGACGAGGATTTACCCATTTTAAGAAAAGCAATAGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAAGCTCAATGAGAAGAGGCTTTATGAGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCAGAGTTATAGATGGAAAAGTGGTAAGATTGTCTTCTTTACTTTTGTTATTTGACTCTCTGGTTTCTTATTTATTCTTACTGGGTGAGCTCATAATTTATCTTTTATACTTGGACAGGTCAACCATTCGAGAGGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAATTCACCTATCAGAATATCCAATCTTGCCTCTGGAGGAGTTCTCAACGACCAGGCAGTGCCAGTGAGCGCTTTCAATGATAAGATGCAGATTTTAGATGGGCAGGACTCTGTGATCCTGAGGAGCCTTGGACATATCCAGAGGAAACTTGATAAACTGGAGGAAGAGTTTTTTAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAACATCTCTACAACAAGGTGCAGGCAAATGGTATGGCAGCATACTTTGTGACATTGACTACATATCTTGGCCTTTGGTGTGGCAGAATATTACTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

297

Amino Acids

34.1

Weight (kDa)

9.31

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	76 - 191	4.1e-08	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 83
AclWI	GGATC	2 cut(s)	12, 685
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	44
AfeI	AGCGCT	1 cut(s)	646
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	161, 385, 652
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	4 cut(s)	10, 170, 334, 499
AluI	AGCT	4 cut(s)	10, 170, 334, 499
Alw21I	GWGCWC	2 cut(s)	501, 766
Alw26I	GTCTC	2 cut(s)	48, 168
AlwI	GGATC	2 cut(s)	12, 685
Aor51HI	AGCGCT	1 cut(s)	646
AoxI	GGCC	2 cut(s)	61, 862
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	647
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	506, 573
AvaII	GGWCC	1 cut(s)	52
AxyI	CCTNAGG	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	2 cut(s)	501, 766
BbvI	GCAGC	1 cut(s)	842
BccI	CCATC	2 cut(s)	416, 668
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	629
BcoDI	GTCTC	2 cut(s)	48, 168
BfoI	RGCGCY	1 cut(s)	648
BglII	AGATCT	1 cut(s)	95
BisI	GCNGC	2 cut(s)	81, 831
BlsI	GCNGC	2 cut(s)	82, 832
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	701
BmrFI	CCNGG	1 cut(s)	629
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	651
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	603, 635
BpmI	CTGGAG	3 cut(s)	192, 630, 755
BsaJI	CCNNGG	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	728, 758
Bse1I	ACTGG	3 cut(s)	495, 638, 738
Bse21I	CCTNAGG	1 cut(s)	695
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	285, 686
BseNI	ACTGG	3 cut(s)	495, 638, 738
BseRI	GAGGAG	4 cut(s)	93, 627, 712, 774
BseSI	GKGCMC	1 cut(s)	362
BseX3I	CGGCCG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	833
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	63, 864
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	501, 766
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	2 cut(s)	304, 392
BsmAI	GTCTC	2 cut(s)	48, 168
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	304, 392
BsnI	GGCC	2 cut(s)	63, 864
Bsp1286I	GDGCHC	3 cut(s)	362, 501, 766
Bsp143I	GATC	3 cut(s)	4, 95, 690
BspACI	CCGC	2 cut(s)	80, 83
BspANI	GGCC	2 cut(s)	63, 864
BspCNI	CTCAG	2 cut(s)	286, 687
BspLI	GGNNCC	1 cut(s)	701
BspPI	GGATC	2 cut(s)	12, 685
BsrI	ACTGG	3 cut(s)	495, 638, 738
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	3 cut(s)	4, 95, 690
BssT1I	CCWWGG	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	629
Bst6I	CTCTTC	3 cut(s)	23, 338, 735
BstC8I	GCNNGC	2 cut(s)	78, 816
BstDEI	CTNAG	3 cut(s)	294, 695, 767
BstF5I	GGATG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	3 cut(s)	7, 98, 693
BstMAI	GTCTC	2 cut(s)	48, 168
BstMBI	GATC	3 cut(s)	4, 95, 690
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 770
BstNI	CCWGG	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	842
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BstZI	CGGCCG	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	695
BsuRI	GGCC	2 cut(s)	63, 864
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	2 cut(s)	125, 639
BtsIMutI	CAGTG	3 cut(s)	125, 639, 645
Cac8I	GCNNGC	2 cut(s)	78, 816
CfoI	GCGC	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	3 cut(s)	250, 554, 564
DdeI	CTNAG	3 cut(s)	294, 695, 767
DpnI	GATC	3 cut(s)	6, 97, 692
DpnII	GATC	3 cut(s)	4, 95, 690
DraI	TTTAAA	1 cut(s)	751
EaeI	YGGCCR	1 cut(s)	61
EagI	CGGCCG	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	23, 338, 735
EarI	CTCTTC	3 cut(s)	23, 338, 735
EciI	GGCGGA	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	499
EclXI	CGGCCG	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	703
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	52
Eco47III	AGCGCT	1 cut(s)	646
Eco52I	CGGCCG	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	703
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	253, 557, 567
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	2 cut(s)	304, 392
FatI	CATG	3 cut(s)	249, 553, 563
Fnu4HI	GCNGC	2 cut(s)	81, 831
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	81, 831
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	2 cut(s)	81, 831
GsuI	CTGGAG	3 cut(s)	192, 630, 755
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	2 cut(s)	63, 864
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	1 cut(s)	647
Hin1II	CATG	3 cut(s)	253, 557, 567
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	3 cut(s)	19, 464, 683
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	2 cut(s)	506, 573
Hpy166II	GTNNAC	2 cut(s)	398, 531
Hpy188I	TCNGA	2 cut(s)	24, 590
Hpy188III	TCNNGA	5 cut(s)	16, 539, 609, 694, 715
Hpy8I	GTNNAC	2 cut(s)	398, 531
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	129, 179
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	572, 664, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 770
HpyF3I	CTNAG	3 cut(s)	294, 695, 767
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	253, 557, 567
HspAI	GCGC	1 cut(s)	645
Kzo9I	GATC	3 cut(s)	4, 95, 690
LmnI	GCTCC	4 cut(s)	114, 135, 699, 761
Lsp1109I	GCAGC	1 cut(s)	842
LweI	GCATC	1 cut(s)	651
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	3 cut(s)	6, 97, 692
MboI	GATC	3 cut(s)	4, 95, 690
MboII	GAAGA	9 cut(s)	37, 40, 90, 194, 355, 373, 435, 752, 794
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	3 cut(s)	362, 501, 766
MluCI	AATT	4 cut(s)	367, 504, 577, 785
MlyI	GAGTC	3 cut(s)	13, 458, 677
MseI	TTAA	3 cut(s)	233, 275, 750
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	2 cut(s)	115, 770
NdeII	GATC	3 cut(s)	4, 95, 690
NlaIII	CATG	3 cut(s)	253, 557, 567
NlaIV	GGNNCC	1 cut(s)	701
NmuCI	GTSAC	1 cut(s)	841
PkrI	GCNGC	2 cut(s)	82, 832
PleI	GAGTC	3 cut(s)	13, 458, 677
PpsI	GAGTC	3 cut(s)	13, 458, 677
Psp124BI	GAGCTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	701
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	233, 275, 750
SatI	GCNGC	2 cut(s)	81, 831
Sau3AI	GATC	3 cut(s)	4, 95, 690
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	3 cut(s)	13, 458, 677
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	3 cut(s)	362, 501, 766
SetI	ASST	9 cut(s)	12, 172, 322, 336, 501, 530, 546, 586, 813
SfaNI	GCATC	1 cut(s)	651
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	4 cut(s)	367, 504, 577, 785
SsiI	CCGC	2 cut(s)	80, 83
SspI	AATATT	1 cut(s)	882
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	703
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	538
TasI	AATT	4 cut(s)	367, 504, 577, 785
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	233, 275, 750
Tru9I	TTAA	3 cut(s)	233, 275, 750
TscAI	CASTG	3 cut(s)	132, 639, 645
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	1 cut(s)	830
Tsp45I	GTSAC	1 cut(s)	841
TspDTI	ATGAA	3 cut(s)	136, 795, 807
TspRI	CASTG	3 cut(s)	132, 639, 645
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.