Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

39394346 .. 39398781

Gene Structure 4436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGAGACAGTATTTCAAGGACGGGGCAGCACTTGAAGCCGAGTTTCAACAATCTTGTCTACCTCTGCACAATCAGATTTGTGATATCGTGAATACTGTTCCTTATTTTTGGCTCAAAGCTTTGACCAACAACAAAGTGCTACGTGCCAAGATTACTGAGCACGATGAACGAGCTCTTAAGTTTCTTAGAGACATCAAGTGGTCTAAAACAGATAGCCAAAGGGGGTTTGGTTTCAAGCTTGAGTTCTTCTTTGACAGCAATCCTTTCTTTCGAAATCCTGTCTTAACAAAGACTTATGACATGATTGACAAAGATTTACCCATTTTAAGAAAAGCAATAGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAATCTCAATGAGAAGAGGCTTTATGAGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCAAAGTTATAGATGGAAAAGCGGTCAACCATTCGAGAGGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAGGATAAGATGCAGATTTTAGATGGGCAGGAGTCCGTTATCCTCAGGGGCCTGGGAAATATCCAGAGGAAACTTGATAAACTGGAGGAAGAGTTTTTCAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAATCTCTCCAGAACAAGCGATGCAGTATTGTAAACGGTGATGCTGGACCTGAAGGAGATTCTAATGAAGCTGCCACAAAGCAGGAGCCTGCAACCTGTAAATGCACTTGTGTAAAAGCTGTTACTGAACCAGATTTAGTTGCTTTCATACGCTCTAGAGTGAATGGAGTGCCTGGATTCTGGCTCCATGCTTTATCAAAAAATAACTTGCTAACACGAGAGATTATTGGGCGTGACACTGAAGCTCTTGCATATCTTAGAGACATCAAGGGGTCCAAGATAGATGGTGTACCCATTCTAGCAAAAGCAATAGGGACGGAAATTGAATGGTATCCAGGTCGTTGCTTGACAAAGAACACCATTGAGAAGAATAGTAAGAAAGGATCTTTTCCCAAAGGAACTGAAAATCGTAAAAATATTGATGCTGTTAGAAACCAAATGGAAATAGATTATGAAATTGGGTTAACAATTCGAGACATGGTCATCCCCTATGCTGTTTCTTGGTTTACGGGGGAGTCTTGGAGAAGTACGGATGAATACTGTGACAGTGAGGATGATGATGACGAAGATGATGATGAGGATGAGGATGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

423

Amino Acids

48.56

Weight (kDa)

5.5

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	32 - 157	3.9e-33	Nucleosome assembly protein (NAP)
NAP	PF00956	195 - 318	9.5e-20	Nucleosome assembly protein (NAP)
NAP	PF00956	324 - 397	1.1e-09	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	1 cut(s)	1066
AcuI	CTGAAG	2 cut(s)	747, 936
AfaI	GTAC	2 cut(s)	966, 1204
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	7 cut(s)	19, 38, 50, 238, 439, 634, 1001
AjnI	CCWGG	3 cut(s)	585, 847, 1009
AluBI	AGCT	6 cut(s)	122, 176, 241, 746, 794, 920
AluI	AGCT	6 cut(s)	122, 176, 241, 746, 794, 920
Alw21I	GWGCWC	3 cut(s)	165, 178, 649
Alw26I	GTCTC	3 cut(s)	186, 930, 1143
AlwI	GGATC	1 cut(s)	1066
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	2 cut(s)	29, 746
AspS9I	GGNCC	3 cut(s)	583, 722, 948
AsuHPI	GGTGA	1 cut(s)	725
AsuII	TTCGAA	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	722, 948
AxyI	CCTNAGG	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	891
Bbv12I	GWGCWC	3 cut(s)	165, 178, 649
BbvI	GCAGC	2 cut(s)	41, 733
BccI	CCATC	3 cut(s)	470, 551, 953
BciT130I	CCWGG	3 cut(s)	587, 849, 1011
BciVI	GTATCC	1 cut(s)	1017
BcoDI	GTCTC	3 cut(s)	186, 930, 1143
BfaI	CTAG	2 cut(s)	831, 974
BfrI	CTTAAG	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	1017
BisI	GCNGC	2 cut(s)	30, 747
BlsI	GCNGC	2 cut(s)	31, 748
Bme1390I	CCNGG	3 cut(s)	587, 849, 1011
Bme18I	GGWCC	2 cut(s)	722, 948
BmgT120I	GGNCC	3 cut(s)	583, 722, 948
BmiI	GGNNCC	4 cut(s)	584, 762, 860, 949
BmrFI	CCNGG	3 cut(s)	587, 849, 1011
BmsI	GCATC	4 cut(s)	534, 686, 706, 1087
BpmI	CTGGAG	2 cut(s)	638, 668
Bpu14I	TTCGAA	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	586
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 611, 641
Bse1I	ACTGG	1 cut(s)	621
Bse21I	CCTNAGG	1 cut(s)	578
BseBI	CCWGG	3 cut(s)	587, 849, 1011
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	5 cut(s)	1158, 1213, 1234, 1261, 1267
BseMII	CTCAG	3 cut(s)	150, 339, 592
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	657
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	41, 733
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	585
BsiHKAI	GWGCWC	3 cut(s)	165, 178, 649
BslFI	GGGAC	3 cut(s)	358, 446, 1003
BsmAI	GTCTC	3 cut(s)	186, 930, 1143
BsmFI	GGGAC	3 cut(s)	358, 446, 1003
BsnI	GGCC	1 cut(s)	585
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	4 cut(s)	165, 178, 416, 649
Bsp143I	GATC	1 cut(s)	1058
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	1 cut(s)	585
BspCNI	CTCAG	3 cut(s)	151, 340, 591
BspLI	GGNNCC	4 cut(s)	584, 762, 860, 949
BspPI	GGATC	1 cut(s)	1066
BspT104I	TTCGAA	1 cut(s)	274
BspTI	CTTAAG	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	621
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	1 cut(s)	1058
BssSI	CACGAG	1 cut(s)	891
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	3 cut(s)	587, 849, 1011
Bst4CI	ACNGT	5 cut(s)	12, 100, 713, 1217, 1223
Bst6I	CTCTTC	2 cut(s)	392, 618
BstAFI	CTTAAG	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	6 cut(s)	159, 188, 348, 578, 650, 932
BstF5I	GGATG	5 cut(s)	1158, 1213, 1234, 1261, 1267
BstKTI	GATC	1 cut(s)	1061
BstMAI	GTCTC	3 cut(s)	186, 930, 1143
BstMBI	GATC	1 cut(s)	1058
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 653
BstNI	CCWGG	3 cut(s)	587, 849, 1011
BstSCI	CCNGG	3 cut(s)	585, 847, 1009
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	41, 733
BstX2I	RGATCY	1 cut(s)	1058
BstYI	RGATCY	1 cut(s)	1058
Bsu36I	CCTNAGG	1 cut(s)	578
BsuI	GTATCC	1 cut(s)	1017
BsuRI	GGCC	1 cut(s)	585
BtgZI	GCGATG	1 cut(s)	709
BtsCI	GGATG	5 cut(s)	1158, 1213, 1234, 1261, 1267
BtsIMutI	CAGTG	2 cut(s)	912, 1228
Cac8I	GCNNGC	1 cut(s)	765
Cfr13I	GGNCC	3 cut(s)	583, 722, 948
Csp6I	GTAC	2 cut(s)	965, 1203
CviAII	CATG	5 cut(s)	304, 513, 523, 863, 1153
CviQI	GTAC	2 cut(s)	965, 1203
DdeI	CTNAG	6 cut(s)	159, 188, 348, 578, 650, 932
DpnI	GATC	1 cut(s)	1060
DpnII	GATC	1 cut(s)	1058
Eam1104I	CTCTTC	2 cut(s)	392, 618
EarI	CTCTTC	2 cut(s)	392, 618
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	722, 948
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	747, 936
Eco81I	CCTNAGG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRII	CCWGG	3 cut(s)	585, 847, 1009
EcoRV	GATATC	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	5 cut(s)	307, 516, 526, 866, 1156
FaqI	GGGAC	3 cut(s)	358, 446, 1003
FatI	CATG	5 cut(s)	303, 512, 522, 862, 1152
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	30, 747
FokI	GGATG	4 cut(s)	1145, 1220, 1241, 1268
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	30, 747
FspBI	CTAG	2 cut(s)	831, 974
GluI	GCNGC	2 cut(s)	30, 747
GsuI	CTGGAG	2 cut(s)	638, 668
HaeIII	GGCC	1 cut(s)	585
Hin1II	CATG	5 cut(s)	307, 516, 526, 866, 1156
HincII	GTYRAC	2 cut(s)	490, 1140
HindII	GTYRAC	2 cut(s)	490, 1140
HindIII	AAGCTT	2 cut(s)	120, 239
HinfI	GANTC	5 cut(s)	566, 677, 734, 852, 1190
HpaI	GTTAAC	1 cut(s)	1140
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	7 cut(s)	62, 452, 490, 709, 965, 1140, 1182
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	6 cut(s)	91, 498, 598, 685, 831, 1148
Hpy8I	GTNNAC	7 cut(s)	62, 452, 490, 709, 965, 1140, 1182
HpyAV	CCTTC	1 cut(s)	722
HpyCH4III	ACNGT	5 cut(s)	12, 100, 713, 1217, 1223
HpyCH4IV	ACGT	2 cut(s)	145, 373
HpyCH4V	TGCA	7 cut(s)	70, 531, 547, 699, 767, 780, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 653
HpyF3I	CTNAG	6 cut(s)	159, 188, 348, 578, 650, 932
HpySE526I	ACGT	2 cut(s)	145, 373
Hsp92II	CATG	5 cut(s)	307, 516, 526, 866, 1156
KspAI	GTTAAC	1 cut(s)	1140
Kzo9I	GATC	1 cut(s)	1058
LmnI	GCTCC	3 cut(s)	644, 760, 864
Lsp1109I	GCAGC	2 cut(s)	41, 733
LweI	GCATC	4 cut(s)	534, 686, 706, 1087
MaeI	CTAG	2 cut(s)	831, 974
MaeII	ACGT	2 cut(s)	145, 373
MaeIII	GTNAC	3 cut(s)	796, 908, 1217
MalI	GATC	1 cut(s)	1060
MboI	GATC	1 cut(s)	1058
MboII	GAAGA	7 cut(s)	241, 409, 427, 635, 677, 1054, 1253
MfeI	CAATTG	1 cut(s)	421
MflI	RGATCY	1 cut(s)	1058
MhlI	GDGCHC	4 cut(s)	165, 178, 416, 649
MluCI	AATT	5 cut(s)	421, 668, 996, 1131, 1143
MlyI	GAGTC	2 cut(s)	575, 1199
MseI	TTAA	4 cut(s)	180, 287, 329, 1139
MspCI	CTTAAG	1 cut(s)	179
MspR9I	CCNGG	3 cut(s)	587, 849, 1011
MunI	CAATTG	1 cut(s)	421
MvaI	CCWGG	3 cut(s)	587, 849, 1011
MwoI	GCNNNNNNNGC	2 cut(s)	38, 653
NdeII	GATC	1 cut(s)	1058
NlaIII	CATG	5 cut(s)	307, 516, 526, 866, 1156
NlaIV	GGNNCC	4 cut(s)	584, 762, 860, 949
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	908, 1217
NspV	TTCGAA	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	677, 734, 852
PflFI	GACNNNGTC	1 cut(s)	1154
PkrI	GCNGC	2 cut(s)	31, 748
PleI	GAGTC	2 cut(s)	574, 1198
PpsI	GAGTC	2 cut(s)	574, 1198
Ppu21I	YACGTR	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	3 cut(s)	585, 847, 1009
PspGI	CCWGG	3 cut(s)	585, 847, 1009
PspN4I	GGNNCC	4 cut(s)	584, 762, 860, 949
PspPI	GGNCC	3 cut(s)	583, 722, 948
PsuI	RGATCY	1 cut(s)	1058
PsyI	GACNNNGTC	1 cut(s)	1154
RsaI	GTAC	2 cut(s)	966, 1204
RsaNI	GTAC	2 cut(s)	965, 1203
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	180, 287, 329, 1139
SatI	GCNGC	2 cut(s)	30, 747
Sau3AI	GATC	1 cut(s)	1058
Sau96I	GGNCC	3 cut(s)	583, 722, 948
SchI	GAGTC	2 cut(s)	575, 1199
ScrFI	CCNGG	3 cut(s)	587, 849, 1011
SduI	GDGCHC	4 cut(s)	165, 178, 416, 649
SfaNI	GCATC	4 cut(s)	534, 686, 706, 1087
SfuI	TTCGAA	1 cut(s)	274
SinI	GGWCC	2 cut(s)	722, 948
SmlI	CTYRAG	2 cut(s)	179, 242
SmoI	CTYRAG	2 cut(s)	179, 242
Sse9I	AATT	5 cut(s)	421, 668, 996, 1131, 1143
SsiI	CCGC	1 cut(s)	485
SspI	AATATT	1 cut(s)	1093
SspMI	CTAG	2 cut(s)	831, 974
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	3 cut(s)	585, 847, 1009
TaaI	ACNGT	5 cut(s)	12, 100, 713, 1217, 1223
TaiI	ACGT	2 cut(s)	148, 376
TaqI	TCGA	3 cut(s)	274, 497, 1147
TasI	AATT	5 cut(s)	421, 668, 996, 1131, 1143
TfiI	GAWTC	3 cut(s)	677, 734, 852
Tru1I	TTAA	4 cut(s)	180, 287, 329, 1139
Tru9I	TTAA	4 cut(s)	180, 287, 329, 1139
TscAI	CASTG	2 cut(s)	919, 1228
TseFI	GTSAC	2 cut(s)	908, 1217
TseI	GCWGC	2 cut(s)	29, 746
Tsp45I	GTSAC	2 cut(s)	908, 1217
TspDTI	ATGAA	7 cut(s)	183, 678, 690, 756, 811, 1143, 1224
TspGWI	ACGGA	3 cut(s)	559, 1007, 1220
TspRI	CASTG	2 cut(s)	919, 1228
Tth111I	GACNNNGTC	1 cut(s)	1154
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	722, 948
XbaI	TCTAGA	1 cut(s)	830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	2 cut(s)	831, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.