Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006325.1

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

105672 .. 106554

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006325.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaatggccgcttgatgggaagtagtgcagttgccggactcggtcgtgcttatgagaaattgagggatctgatcaagaggagcagctattcaacagagcatgaaaccaaggaacagagcaatgagctaccggaagcaagtagtactgcctgtgatgaagagtcctctctggcggaaaccaagttagagcaaagctgcaatgtgcctttagacaacccaattgccgttgcaaaaacggccacaaaagggtcagacgaggagaaggaggcaacggatcggaagaacttccagagggatgttctccctggtattgcttgtttgtcaagaaatgaggtgactgaggatctgctccatcgctatctactgcagttagtcagccccagatggatcagcagccacaagaactggaggaaacaagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

140

Amino Acids

15.69

Weight (kDa)

5.96

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	10, 173
AclWI	GGATC	4 cut(s)	75, 282, 351, 395
AcoI	YGGCCR	2 cut(s)	7, 237
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	16, 246
AgsI	TTSAA	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	87, 127, 195
AluI	AGCT	3 cut(s)	87, 127, 195
AlwI	GGATC	4 cut(s)	75, 282, 351, 395
AoxI	GGCC	2 cut(s)	7, 237
ApeKI	GCWGC	3 cut(s)	84, 195, 393
Asp700I	GAANNNNTTC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	96, 182, 405
BccI	CCATC	3 cut(s)	10, 360, 378
BceAI	ACGGC	2 cut(s)	209, 252
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	72
BfaI	CTAG	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	4 cut(s)	10, 85, 196, 394
BlsI	GCNGC	4 cut(s)	11, 86, 197, 395
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	108, 304
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 246
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	2 cut(s)	127, 205
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	108, 304
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	16, 246
BseMI	GCAATG	2 cut(s)	127, 205
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	2 cut(s)	94, 272
BseXI	GCAGC	3 cut(s)	96, 182, 405
BsgI	GTGCAG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	9, 239
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	36, 131
BslI	CCNNNNNNNGG	2 cut(s)	16, 246
BsnI	GGCC	2 cut(s)	9, 239
Bsp143I	GATC	5 cut(s)	67, 72, 274, 343, 387
BspACI	CCGC	2 cut(s)	10, 173
BspANI	GGCC	2 cut(s)	9, 239
BspCNI	CTCAG	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	4 cut(s)	75, 282, 351, 395
BsrDI	GCAATG	2 cut(s)	127, 205
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	108, 304
BssMI	GATC	5 cut(s)	67, 72, 274, 343, 387
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	5 cut(s)	70, 75, 277, 346, 390
BstMBI	GATC	5 cut(s)	67, 72, 274, 343, 387
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	3 cut(s)	96, 182, 405
BstX2I	RGATCY	2 cut(s)	67, 343
BstYI	RGATCY	2 cut(s)	67, 343
BsuRI	GGCC	2 cut(s)	9, 239
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	7 cut(s)	9, 87, 127, 195, 239, 378, 396
CviKI_1	RGCY	7 cut(s)	9, 87, 127, 195, 239, 378, 396
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	5 cut(s)	69, 74, 276, 345, 389
DpnII	GATC	5 cut(s)	67, 72, 274, 343, 387
EaeI	YGGCCR	2 cut(s)	7, 237
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	104
FaiI	YATR	2 cut(s)	54, 102
FatI	CATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	10, 85, 196, 394
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	4 cut(s)	10, 85, 196, 394
FspBI	CTAG	1 cut(s)	421
GluI	GCNGC	4 cut(s)	10, 85, 196, 394
HaeIII	GGCC	2 cut(s)	9, 239
HapII	CCGG	2 cut(s)	36, 131
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	2 cut(s)	39, 161
HpaII	CCGG	2 cut(s)	36, 131
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	72, 253, 279
Hpy188III	TCNNGA	3 cut(s)	76, 289, 324
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	4 cut(s)	29, 198, 230, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	67, 72, 274, 343, 387
LmnI	GCTCC	2 cut(s)	81, 354
LpnPI	CCDG	9 cut(s)	49, 144, 155, 163, 291, 302, 318, 391, 394
Lsp1109I	GCAGC	3 cut(s)	96, 182, 405
MaeI	CTAG	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	5 cut(s)	69, 74, 276, 345, 389
MboI	GATC	5 cut(s)	67, 72, 274, 343, 387
MboII	GAAGA	2 cut(s)	170, 292
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	67, 343
MluCI	AATT	2 cut(s)	59, 219
MlyI	GAGTC	2 cut(s)	33, 170
MnlI	CCTC	9 cut(s)	57, 72, 175, 250, 259, 285, 325, 334, 402
MroXI	GAANNNNTTC	1 cut(s)	284
MspI	CCGG	2 cut(s)	36, 131
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	5 cut(s)	67, 72, 274, 343, 387
NlaIII	CATG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	11, 86, 197, 395
PleI	GAGTC	2 cut(s)	33, 169
PpsI	GAGTC	2 cut(s)	33, 169
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	369
PsuI	RGATCY	2 cut(s)	67, 343
PsyI	GACNNNGTC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SatI	GCNGC	4 cut(s)	10, 85, 196, 394
Sau3AI	GATC	5 cut(s)	67, 72, 274, 343, 387
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	2 cut(s)	33, 170
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	4 cut(s)	89, 129, 197, 336
SfcI	CTRYAG	1 cut(s)	365
Sse9I	AATT	2 cut(s)	59, 219
SsiI	CCGC	2 cut(s)	10, 173
SspMI	CTAG	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	108
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	59, 219
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	3 cut(s)	84, 195, 393
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	17, 117, 171
TspGWI	ACGGA	1 cut(s)	287
Tth111I	GACNNNGTC	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	421
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.