Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

30521627 .. 30525178

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGTATATCGAACACTTTTGACACCAAATCTCAATGAGAAGAGGCTTTACGAGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCAAAGTTATAGATGGAAAAGCGAGTTTTTCAAAAAGAGAGGGAGCACTTAGAGCCAAGTATGAAGAATTGCATGAAGCTCTCTACAACAAGAAATGCACTTGTGTAAAAGCTGTTACTGAACCAGATTTAGTTGCTTTCATACGCTCTAGAGCAAATGGAGTGCCTGGATTCTGGCTCCATGCTTTATCAAAAAATAACTTGCTAACACGAGAGGGGTCCAAGATAGATGGTGACAATAAGGGATTTAAACTGGACTTCTATTTTGAACCTAATAACTTTTTTATGAACCCGGTTTTGACCAAGACATGTCATATGGTTGATGAAGGTGTACCCATTCTAGCAAAAGCAATAGGGATGGAAATTGAATGGTATCCAGGTCGTTGCTTGACAAAGAACCCCATTAAGAAGAATAGTAATAAAGGATCTTTTCCCAAAGGAACTGAATATCGCAAAAGTTTCTTCAACTTTTTCAGTACGCCTCAAGTCCTTGAAGATATTGATGCTGTTAGAAACCAAATGAAAATAGATTATGAAATTGGGTCAACAATTCGAGACATGATCATCCCCTATGCTGTTTCTTGGTTTACGGGGGAGGCTTGGAGAAGTAGGGATGAATACAGTGACAATGAGGATGATGATGACGAAGATGAGGATGAGGATGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

258

Amino Acids

29.76

Weight (kDa)

5.15

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	113 - 234	1.8e-32	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	538
AfaI	GTAC	2 cut(s)	438, 583
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	82, 138, 374, 473, 571, 599
AjnI	CCWGG	2 cut(s)	271, 481
AluBI	AGCT	2 cut(s)	185, 218
AluI	AGCT	2 cut(s)	185, 218
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	654
AlwI	GGATC	1 cut(s)	538
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BauI	CACGAG	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	3 cut(s)	113, 329, 457
BciT130I	CCWGG	2 cut(s)	273, 483
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	2 cut(s)	255, 446
BfuI	GTATCC	1 cut(s)	489
Bme1390I	CCNGG	3 cut(s)	273, 398, 483
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	284, 325
BmrFI	CCNGG	3 cut(s)	273, 398, 483
BmsI	GCATC	1 cut(s)	598
BpuEI	CTTGAG	1 cut(s)	573
BpuMI	CCSGG	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	273, 483
BseGI	GGATG	6 cut(s)	468, 669, 724, 745, 766, 772
BseNI	ACTGG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	59, 154
Bsp143I	GATC	2 cut(s)	530, 666
BspLI	GGNNCC	2 cut(s)	284, 325
BspPI	GGATC	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	530, 666
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	273, 483
Bst4CI	ACNGT	1 cut(s)	728
Bst6I	CTCTTC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	6 cut(s)	468, 669, 724, 745, 766, 772
BstKTI	GATC	2 cut(s)	533, 669
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	2 cut(s)	530, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	2 cut(s)	273, 483
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	3 cut(s)	271, 396, 481
BstSLI	GKGCMC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuI	GTATCC	1 cut(s)	489
BtsCI	GGATG	6 cut(s)	468, 669, 724, 745, 766, 772
BtsIMutI	CAGTG	1 cut(s)	733
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	437, 582
CviAII	CATG	4 cut(s)	179, 287, 414, 664
CviJI	RGCY	6 cut(s)	46, 161, 185, 218, 283, 704
CviKI_1	RGCY	6 cut(s)	46, 161, 185, 218, 283, 704
CviQI	GTAC	2 cut(s)	437, 582
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	532, 668
DpnII	GATC	2 cut(s)	530, 666
DraI	TTTAAA	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	271, 481
FaeI	CATG	4 cut(s)	182, 290, 417, 667
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	4 cut(s)	178, 286, 413, 663
FauNDI	CATATG	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	666
FokI	GGATG	5 cut(s)	475, 656, 731, 752, 773
FspBI	CTAG	2 cut(s)	255, 446
HapII	CCGG	1 cut(s)	398
Hin1II	CATG	4 cut(s)	182, 290, 417, 667
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	4 cut(s)	95, 437, 651, 693
Hpy188III	TCNNGA	2 cut(s)	255, 659
Hpy8I	GTNNAC	4 cut(s)	95, 437, 651, 693
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	728
HpyCH4V	TGCA	2 cut(s)	178, 204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	182, 290, 417, 667
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	2 cut(s)	530, 666
LmnI	GCTCC	2 cut(s)	149, 288
LpnPI	CCDG	8 cut(s)	243, 258, 265, 285, 344, 411, 468, 495
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	2 cut(s)	255, 446
MaeIII	GTNAC	3 cut(s)	220, 338, 728
MalI	GATC	2 cut(s)	532, 668
MboI	GATC	2 cut(s)	530, 666
MboII	GAAGA	7 cut(s)	52, 70, 182, 526, 559, 611, 764
MfeI	CAATTG	1 cut(s)	64
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	59, 154
MluCI	AATT	5 cut(s)	64, 173, 468, 642, 654
MnlI	CCTC	9 cut(s)	36, 46, 139, 313, 597, 694, 730, 751, 757
MseI	TTAA	2 cut(s)	354, 510
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	3 cut(s)	273, 398, 483
MunI	CAATTG	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	273, 483
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	398
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	2 cut(s)	530, 666
NlaIII	CATG	4 cut(s)	182, 290, 417, 667
NlaIV	GGNNCC	2 cut(s)	284, 325
NmuCI	GTSAC	2 cut(s)	338, 728
NspI	RCATGY	1 cut(s)	417
PciI	ACATGT	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	271, 481
PspGI	CCWGG	2 cut(s)	271, 481
PspN4I	GGNNCC	2 cut(s)	284, 325
PspPI	GGNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	2 cut(s)	438, 583
RsaNI	GTAC	2 cut(s)	437, 582
SaqAI	TTAA	2 cut(s)	354, 510
Sau3AI	GATC	2 cut(s)	530, 666
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	3 cut(s)	273, 398, 483
SduI	GDGCHC	2 cut(s)	59, 154
SetI	ASST	5 cut(s)	187, 220, 379, 436, 487
SfaNI	GCATC	1 cut(s)	598
SinI	GGWCC	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
Sse9I	AATT	5 cut(s)	64, 173, 468, 642, 654
SspMI	CTAG	2 cut(s)	255, 446
StyD4I	CCNGG	3 cut(s)	271, 396, 481
TaaI	ACNGT	1 cut(s)	728
TaqI	TCGA	2 cut(s)	10, 658
TasI	AATT	5 cut(s)	64, 173, 468, 642, 654
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	2 cut(s)	354, 510
Tru9I	TTAA	2 cut(s)	354, 510
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	2 cut(s)	338, 728
Tsp45I	GTSAC	2 cut(s)	338, 728
TspDTI	ATGAA	8 cut(s)	183, 195, 235, 407, 444, 641, 654, 735
TspRI	CASTG	1 cut(s)	733
VpaK11BI	GGWCC	1 cut(s)	324
XbaI	TCTAGA	1 cut(s)	254
XceI	RCATGY	1 cut(s)	417
XspI	CTAG	2 cut(s)	255, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.