Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

2383434 .. 2389606

Gene Structure 6173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00334950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTACACCGTCCTAGTCTCCTCGGGAGCCGACGGTAGTGCCGCGACCACAACGATTCTGAGAACCAGTTTCTCCCAAGCTCGTGAAGAACCATCAAGCCGCCAAATAGCCGGTCTCTTCACCACGCCGACTTCGGACAAGCGGGGAAATCACCTACAAGCTCGGAAGTCGTCAAACACGCGGAGGATCAACAAGCACCAAGCACACGTGCTGGTTCATCCACCATCAAAAGCCGAAGAACGCCCACCACGTGACACCGCTCGTGGCCTAAATCGATCAAGTTCAAGCCTCTCGCATCCCTTGATCAACCGCCTTCTACAAGTTGTCAATAAACTCGTGGAGAATCAACAAGCACCAAACACACGTGCCGGTTCATCCCCTACCAAAGCCGAAGAACACTCACCACGTGACACCACTCGTGGCCTAAATCCGATCAAGATCAAGCTTCTACAGCCCTTGGTCAATCATCTTCCTCAAATCGTCAACATAGCAGGAAGTCCACATTGCAACCGTTTGATTCAAGATCAAGTGCTCGCCACCCTTGGATTAAATCAACGTCGAGATCAAATCGAGGAGAATCTTGTGAAAGAGCATCTACGAGAGATTGTTTGTACTGTGCTCGGCGACTACGGCAGTGGGGGAGATCGAGCTAGGAATGAGATCGCTCTCAAAGAGCGTGAGCTGGGGAAGAAGAGCTACCAGCTGCATGCAAAATTTGGGAGCATTGAGTTGCTACTTGATGTTCCCGAAGTTGTGTCTAGGCATAAGCAAAAGAAAATGGCATTCTGCTTTCCTCACCATATACTTGCTCTAGAGCCTTCCTGTCTTCACCACCTTCTTCTCAACCCAAAGACACCAAAGCCACATTCTTATCGCGCACGAGTCTCATACTCCATTGTTAGTGTTGAATCGGTTTCGGTGCCACCATTTAATGGCTTCAAAGTTGATCAAAAAAGCCTCACTAAGCTAGTGAAGGAGAAAAATCTCAACCGCTTCGGAGCCGGGAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

337

Amino Acids

37.46

Weight (kDa)

10.12

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	919
AccB7I	CCANNNNNTGG	1 cut(s)	932
AccBSI	CCGCTC	1 cut(s)	260
AccII	CGCG	3 cut(s)	44, 181, 876
AciI	CCGC	7 cut(s)	42, 100, 142, 181, 258, 310, 991
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	713
AcvI	CACGTG	4 cut(s)	208, 251, 365, 407
AdeI	CACNNNGTG	2 cut(s)	251, 407
AfaI	GTAC	2 cut(s)	5, 613
AfiI	CCNNNNNNNGG	1 cut(s)	932
AflIII	ACRYGT	2 cut(s)	205, 362
AgsI	TTSAA	4 cut(s)	285, 521, 908, 940
AjuI	GAANNNNNNNTTGG	2 cut(s)	850, 882
AluBI	AGCT	8 cut(s)	80, 161, 445, 650, 682, 696, 703, 967
AluI	AGCT	8 cut(s)	80, 161, 445, 650, 682, 696, 703, 967
Alw21I	GWGCWC	2 cut(s)	534, 621
Alw26I	GTCTC	3 cut(s)	22, 119, 889
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	265, 421
ApeKI	GCWGC	1 cut(s)	703
ApoI	RAATTY	1 cut(s)	713
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AspLEI	GCGC	1 cut(s)	878
AsuC2I	CCSGG	1 cut(s)	1003
AsuHPI	GGTGA	5 cut(s)	112, 143, 393, 788, 821
AvaI	CYCGRG	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	919
BarI	GAAGNNNNNNTAC	2 cut(s)	680, 712
BauI	CACGAG	5 cut(s)	81, 261, 335, 417, 879
BbrPI	CACGTG	4 cut(s)	208, 251, 365, 407
BbsI	GAAGAC	1 cut(s)	818
Bbv12I	GWGCWC	2 cut(s)	534, 621
BbvI	GCAGC	1 cut(s)	690
BccI	CCATC	2 cut(s)	100, 232
BceAI	ACGGC	1 cut(s)	646
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BclI	TGATCA	2 cut(s)	303, 946
BcnI	CCSGG	1 cut(s)	1003
BcoDI	GTCTC	3 cut(s)	22, 119, 889
BfaI	CTAG	5 cut(s)	14, 651, 759, 812, 968
BfmI	CTRYAG	1 cut(s)	449
BisI	GCNGC	3 cut(s)	42, 100, 704
BlsI	GCNGC	3 cut(s)	43, 101, 705
Bme1390I	CCNGG	1 cut(s)	1003
BmeT110I	CYCGRG	1 cut(s)	22
BmiI	GGNNCC	3 cut(s)	28, 921, 1000
BmrFI	CCNGG	1 cut(s)	1003
BmsI	GCATC	2 cut(s)	304, 601
BpiI	GAAGAC	1 cut(s)	818
BpuMI	CCSGG	1 cut(s)	1003
Bsa29I	ATCGAT	1 cut(s)	274
BsaAI	YACGTR	4 cut(s)	208, 251, 365, 407
BsaBI	GATNNNNATC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	21, 456, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	932
Bse118I	RCCGGY	2 cut(s)	110, 368
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	437
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	21, 456, 541
BseGI	GGATG	3 cut(s)	217, 295, 374
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	932
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	2 cut(s)	10, 587
BseXI	GCAGC	1 cut(s)	690
BseYI	CCCAGC	1 cut(s)	682
Bsh1236I	CGCG	3 cut(s)	44, 181, 876
BshFI	GGCC	2 cut(s)	267, 423
BshNI	GGYRCC	1 cut(s)	919
BshVI	ATCGAT	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	534, 621
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	111, 369, 1002
BslI	CCNNNNNNNGG	1 cut(s)	932
BsmAI	GTCTC	3 cut(s)	22, 119, 889
BsmI	GAATGC	1 cut(s)	782
BsnI	GGCC	2 cut(s)	267, 423
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	534, 621
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	7 cut(s)	42, 100, 142, 181, 258, 310, 991
BspANI	GGCC	2 cut(s)	267, 423
BspCNI	CTCAG	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	274
BspFNI	CGCG	3 cut(s)	44, 181, 876
BspLI	GGNNCC	3 cut(s)	28, 921, 1000
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	686
BspT107I	GGYRCC	1 cut(s)	919
BspTNI	GGTCTC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	2 cut(s)	110, 368
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	2 cut(s)	110, 368
BssECI	CCNNGG	3 cut(s)	21, 456, 541
BssSI	CACGAG	5 cut(s)	81, 261, 335, 417, 879
BssT1I	CCWWGG	2 cut(s)	456, 541
Bst2BI	CACGAG	5 cut(s)	81, 261, 335, 417, 879
Bst4CI	ACNGT	4 cut(s)	10, 35, 512, 616
Bst6I	CTCTTC	2 cut(s)	122, 686
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	4 cut(s)	208, 251, 365, 407
BstC8I	GCNNGC	2 cut(s)	534, 708
BstDEI	CTNAG	2 cut(s)	59, 963
BstF5I	GGATG	3 cut(s)	217, 295, 374
BstFNI	CGCG	3 cut(s)	44, 181, 876
BstHHI	GCGC	1 cut(s)	878
BstMAI	GTCTC	3 cut(s)	22, 119, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 630
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	1001
BstSFI	CTRYAG	1 cut(s)	449
BstUI	CGCG	3 cut(s)	44, 181, 876
BstV1I	GCAGC	1 cut(s)	690
BstV2I	GAAGAC	1 cut(s)	818
Bsu15I	ATCGAT	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	267, 423
BsuTUI	ATCGAT	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	217, 295, 374
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	534, 708
CfoI	GCGC	1 cut(s)	878
Cfr10I	RCCGGY	2 cut(s)	110, 368
ClaI	ATCGAT	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	4, 612
CviAII	CATG	1 cut(s)	707
CviQI	GTAC	2 cut(s)	4, 612
DdeI	CTNAG	2 cut(s)	59, 963
DraIII	CACNNNGTG	2 cut(s)	251, 407
Eam1104I	CTCTTC	2 cut(s)	122, 686
EarI	CTCTTC	2 cut(s)	122, 686
Eco130I	CCWWGG	2 cut(s)	456, 541
Eco31I	GGTCTC	1 cut(s)	119
Eco72I	CACGTG	4 cut(s)	208, 251, 365, 407
Eco88I	CYCGRG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	456, 541
ErhI	CCWWGG	2 cut(s)	456, 541
FaeI	CATG	1 cut(s)	710
FaiI	YATR	6 cut(s)	488, 708, 765, 801, 803, 889
FatI	CATG	1 cut(s)	706
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	2 cut(s)	303, 946
Fnu4HI	GCNGC	3 cut(s)	42, 100, 704
FokI	GGATG	3 cut(s)	204, 282, 361
Fsp4HI	GCNGC	3 cut(s)	42, 100, 704
FspBI	CTAG	5 cut(s)	14, 651, 759, 812, 968
GlaI	GCGC	1 cut(s)	877
GluI	GCNGC	3 cut(s)	42, 100, 704
GsaI	CCCAGC	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	267, 423
HapII	CCGG	3 cut(s)	111, 369, 1002
HhaI	GCGC	1 cut(s)	878
Hin1II	CATG	1 cut(s)	710
Hin6I	GCGC	1 cut(s)	876
HinP1I	GCGC	1 cut(s)	876
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	6 cut(s)	55, 343, 517, 577, 882, 908
HpaII	CCGG	3 cut(s)	111, 369, 1002
HphI	GGTGA	5 cut(s)	112, 143, 393, 788, 821
Hpy166II	GTNNAC	3 cut(s)	6, 484, 500
Hpy188I	TCNGA	5 cut(s)	60, 136, 165, 432, 998
Hpy188III	TCNNGA	7 cut(s)	24, 83, 436, 521, 560, 746, 812
Hpy8I	GTNNAC	3 cut(s)	6, 484, 500
Hpy99I	CGWCG	2 cut(s)	35, 561
HpyAV	CCTTC	4 cut(s)	323, 828, 845, 967
HpyCH4III	ACNGT	4 cut(s)	10, 35, 512, 616
HpyCH4IV	ACGT	5 cut(s)	207, 250, 364, 406, 556
HpyCH4V	TGCA	3 cut(s)	507, 706, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 630
HpyF3I	CTNAG	2 cut(s)	59, 963
HpySE526I	ACGT	5 cut(s)	207, 250, 364, 406, 556
Hsp92II	CATG	1 cut(s)	710
HspAI	GCGC	1 cut(s)	876
Ksp22I	TGATCA	2 cut(s)	303, 946
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	3 cut(s)	26, 720, 998
LpnPI	CCDG	8 cut(s)	79, 124, 197, 382, 477, 668, 713, 835
Lsp1109I	GCAGC	1 cut(s)	690
LweI	GCATC	2 cut(s)	304, 601
MaeI	CTAG	5 cut(s)	14, 651, 759, 812, 968
MaeII	ACGT	5 cut(s)	207, 250, 364, 406, 556
MaeIII	GTNAC	2 cut(s)	251, 407
MbiI	CCGCTC	1 cut(s)	260
MboII	GAAGA	9 cut(s)	98, 109, 248, 404, 461, 700, 703, 818, 830
MhlI	GDGCHC	2 cut(s)	534, 621
MluCI	AATT	1 cut(s)	713
MlyI	GAGTC	1 cut(s)	891
MnlI	CCTC	8 cut(s)	31, 177, 299, 483, 565, 804, 968, 999
MseI	TTAA	2 cut(s)	548, 930
MspA1I	CMGCKG	1 cut(s)	703
MspI	CCGG	3 cut(s)	111, 369, 1002
MspR9I	CCNGG	1 cut(s)	1003
Mva1269I	GAATGC	1 cut(s)	782
MvnI	CGCG	3 cut(s)	44, 181, 876
MwoI	GCNNNNNNNGC	2 cut(s)	451, 630
NciI	CCSGG	1 cut(s)	1003
NlaIII	CATG	1 cut(s)	710
NlaIV	GGNNCC	3 cut(s)	28, 921, 1000
NmeAIII	GCCGAG	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	251, 407
NspI	RCATGY	1 cut(s)	710
PaeI	GCATGC	1 cut(s)	710
PciSI	GCTCTTC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PctI	GAATGC	1 cut(s)	782
PfeI	GAWTC	5 cut(s)	55, 343, 517, 577, 908
PflMI	CCANNNNNTGG	1 cut(s)	932
PkrI	GCNGC	3 cut(s)	43, 101, 705
PleI	GAGTC	1 cut(s)	890
PmaCI	CACGTG	4 cut(s)	208, 251, 365, 407
PmlI	CACGTG	4 cut(s)	208, 251, 365, 407
PpsI	GAGTC	1 cut(s)	890
Ppu21I	YACGTR	4 cut(s)	208, 251, 365, 407
PspCI	CACGTG	4 cut(s)	208, 251, 365, 407
PspFI	CCCAGC	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	28, 921, 1000
PvuII	CAGCTG	1 cut(s)	703
RsaI	GTAC	2 cut(s)	5, 613
RsaNI	GTAC	2 cut(s)	4, 612
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	2 cut(s)	548, 930
SatI	GCNGC	3 cut(s)	42, 100, 704
SchI	GAGTC	1 cut(s)	891
ScrFI	CCNGG	1 cut(s)	1003
SduI	GDGCHC	2 cut(s)	534, 621
SfaNI	GCATC	2 cut(s)	304, 601
SfcI	CTRYAG	1 cut(s)	449
SphI	GCATGC	1 cut(s)	710
Sse9I	AATT	1 cut(s)	713
SsiI	CCGC	7 cut(s)	42, 100, 142, 181, 258, 310, 991
SspMI	CTAG	5 cut(s)	14, 651, 759, 812, 968
StyD4I	CCNGG	1 cut(s)	1001
StyI	CCWWGG	2 cut(s)	456, 541
TaaI	ACNGT	4 cut(s)	10, 35, 512, 616
TaiI	ACGT	5 cut(s)	210, 253, 367, 409, 559
TaqI	TCGA	4 cut(s)	274, 559, 570, 646
TasI	AATT	1 cut(s)	713
TatI	WGTACW	2 cut(s)	3, 611
TauI	GCSGC	2 cut(s)	44, 102
TfiI	GAWTC	5 cut(s)	55, 343, 517, 577, 908
Tru1I	TTAA	2 cut(s)	548, 930
Tru9I	TTAA	2 cut(s)	548, 930
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	2 cut(s)	251, 407
TseI	GCWGC	1 cut(s)	703
Tsp45I	GTSAC	2 cut(s)	251, 407
TspDTI	ATGAA	2 cut(s)	206, 363
TspRI	CASTG	1 cut(s)	640
Van91I	CCANNNNNTGG	1 cut(s)	932
XapI	RAATTY	1 cut(s)	713
XbaI	TCTAGA	1 cut(s)	811
XceI	RCATGY	1 cut(s)	710
XspI	CTAG	5 cut(s)	14, 651, 759, 812, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.