Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

48067592 .. 48069177

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATTGACGAGGATTTACCCATTTTAAGAAAAGCAATAGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAAGCTCAATGAGAAGAGGCTTTATGTGGGCACTAACAATTGGGAAAGTTTCTTCAACTTTTTTCAGTCCACCCCAAGTCCCCGAGTTATAGATGGAAAAGCGGTCAACCATTCGAGAGTGGACCAACTTCGCCCACCTCTCCTCGGTAGTTCACCTATCGAATATCCAATCTTTCCTCTGGAGGAGTTCTCAAACGACCAGGCAGTGCTAGTGAGCGCTTTCAATAGGAAACTTGATAAACTGGAGGAAGAGTTTTTTAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAACATCTCTACAACAAGAGTCTTAGGCGGATCAATCAGCATGTCACTTTTTCACCCATTTTGACACCGGTTGATGAGCTTAGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

156

Amino Acids

18.38

Weight (kDa)

7.94

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	182, 409
AclWI	GGATC	1 cut(s)	419
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	68
AgeI	ACCGGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	136, 304
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	85, 460
AluI	AGCT	2 cut(s)	85, 460
Alw21I	GWGCWC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	162
Aor51HI	AGCGCT	1 cut(s)	298
AsiGI	ACCGGT	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	225, 426
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	355
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	2 cut(s)	281, 344
Bpu10I	CCTNAGC	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	3 cut(s)	212, 278, 363
BseSI	GKGCMC	1 cut(s)	113
BshTI	ACCGGT	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	2 cut(s)	55, 144
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	55, 144
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	113, 355
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	182, 409
BspCNI	CTCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	89, 324
BstDEI	CTNAG	4 cut(s)	45, 356, 404, 461
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	448
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	4 cut(s)	85, 100, 362, 460
CviKI_1	RGCY	4 cut(s)	85, 100, 362, 460
DdeI	CTNAG	4 cut(s)	45, 356, 404, 461
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
DraI	TTTAAA	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	89, 324
EarI	CTCTTC	2 cut(s)	89, 324
EciI	GGCGGA	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	202
Eco47III	AGCGCT	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	425
FaiI	YATR	6 cut(s)	60, 105, 170, 369, 381, 423
FaqI	GGGAC	2 cut(s)	55, 144
FatI	CATG	1 cut(s)	421
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	298
GsuI	CTGGAG	2 cut(s)	281, 344
HaeII	RGCGCY	1 cut(s)	300
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	225, 426
Hpy166II	GTNNAC	4 cut(s)	150, 187, 202, 233
Hpy188III	TCNNGA	2 cut(s)	195, 260
Hpy8I	GTNNAC	4 cut(s)	150, 187, 202, 233
HpyCH4IV	ACGT	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	4 cut(s)	45, 356, 404, 461
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	5 cut(s)	245, 266, 293, 308, 462
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	4 cut(s)	106, 124, 341, 383
MfeI	CAATTG	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	113, 355
MluCI	AATT	2 cut(s)	118, 374
MlyI	GAGTC	1 cut(s)	409
MnlI	CCTC	8 cut(s)	4, 90, 228, 233, 256, 267, 319, 341
MseI	TTAA	2 cut(s)	26, 339
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	425
PinAI	ACCGGT	1 cut(s)	448
PleI	GAGTC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	26, 339
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	113, 355
SetI	ASST	6 cut(s)	73, 87, 220, 238, 462, 467
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	118, 374
SsiI	CCGC	2 cut(s)	182, 409
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	194, 240
TasI	AATT	2 cut(s)	118, 374
Tru1I	TTAA	2 cut(s)	26, 339
Tru9I	TTAA	2 cut(s)	26, 339
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	384, 396
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	202
XceI	RCATGY	1 cut(s)	425
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.