Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

47704629 .. 47707690

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG343800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATTGACGAGGATTTACCCATTTTAAGAAGAGCAATAGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAAGCTCAATGAGAAGAGGCTTTATGAGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCAGAGTTATAGATGGAAAAGTGGTCAACCATTCGAGAGGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAAGTAAAGATATCTCAATTTTTATTGTATTTATTTTATATTGGACCAACTTCTGCCACCTCTCTCCTCGGTAGTTCACCTATCAGAATATCCAATCTTGCCTCTGGAGGAGTTCTCAACGACCAGGCAGTGCCAGTGAGCGCTTTCAATGATAAGATGCAGATTTTAGATGGGCAGGACTCTGTGATCCTGAGGAGCCTTGGACATATCCAGAGGAAACTTGATAAACTGGAGGAAGAGTTTTTTAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAACATCTCTACAACAAGCTCGGAGAGTCTCCTCCTTACTTTCTCGCTCTCTCTGCTAGGTCTGCTTCTAAGCTTCTCTCTCAAGGGAGAAGTGTCAGTAGATTTAGCAATGCTGCAGTAAGTGAAGAGTTGATCACCCCACCTGTTCATATGAATTGGTGCAGGCAAATGGCATGGCAGCATACTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

236

Amino Acids

26.81

Weight (kDa)

9.37

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	412
AfeI	AGCGCT	1 cut(s)	373
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	136, 379
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	3 cut(s)	85, 538, 592
AluI	AGCT	3 cut(s)	85, 538, 592
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	632, 697
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	300, 646
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	167, 395
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	2 cut(s)	633, 698
BlsI	GCNGC	2 cut(s)	634, 699
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	378
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
BpmI	CTGGAG	2 cut(s)	357, 482
BpuEI	CTTGAG	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	298, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bse1I	ACTGG	2 cut(s)	365, 465
Bse21I	CCTNAGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	298, 430
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	2 cut(s)	36, 413
BseNI	ACTGG	2 cut(s)	365, 465
BseRI	GAGGAG	5 cut(s)	287, 354, 439, 501, 540
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	700
BsiHKAI	GWGCWC	1 cut(s)	493
BslFI	GGGAC	2 cut(s)	55, 143
BsmAI	GTCTC	1 cut(s)	552
BsmFI	GGGAC	2 cut(s)	55, 143
Bsp1286I	GDGCHC	2 cut(s)	113, 493
Bsp143I	GATC	2 cut(s)	417, 651
BspCNI	CTCAG	2 cut(s)	37, 414
BspLI	GGNNCC	1 cut(s)	428
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	365, 465
BssECI	CCNNGG	2 cut(s)	298, 430
BssMI	GATC	2 cut(s)	417, 651
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	356
Bst6I	CTCTTC	4 cut(s)	25, 89, 462, 639
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	4 cut(s)	45, 422, 494, 588
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	2 cut(s)	420, 654
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	2 cut(s)	417, 651
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 572, 581
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	422
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 372
Cac8I	GCNNGC	1 cut(s)	683
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	3 cut(s)	210, 220, 693
CviJI	RGCY	6 cut(s)	85, 100, 429, 500, 538, 592
CviKI_1	RGCY	6 cut(s)	85, 100, 429, 500, 538, 592
DdeI	CTNAG	4 cut(s)	45, 422, 494, 588
DpnI	GATC	2 cut(s)	419, 653
DpnII	GATC	2 cut(s)	417, 651
DraI	TTTAAA	1 cut(s)	478
Eam1104I	CTCTTC	4 cut(s)	25, 89, 462, 639
EarI	CTCTTC	4 cut(s)	25, 89, 462, 639
Eco130I	CCWWGG	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	3 cut(s)	213, 223, 696
FaqI	GGGAC	2 cut(s)	55, 143
FatI	CATG	3 cut(s)	209, 219, 692
FauNDI	CATATG	1 cut(s)	669
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	2 cut(s)	633, 698
Fsp4HI	GCNGC	2 cut(s)	633, 698
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	2 cut(s)	633, 698
GsuI	CTGGAG	2 cut(s)	357, 482
HaeII	RGCGCY	1 cut(s)	375
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	213, 223, 696
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	410, 545
HphI	GGTGA	2 cut(s)	300, 646
Hpy166II	GTNNAC	3 cut(s)	149, 187, 308
Hpy188I	TCNGA	2 cut(s)	317, 542
Hpy188III	TCNNGA	4 cut(s)	195, 336, 421, 442
Hpy8I	GTNNAC	3 cut(s)	149, 187, 308
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	228, 391, 635, 681
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 572, 581
HpyF3I	CTNAG	4 cut(s)	45, 422, 494, 588
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	213, 223, 696
HspAI	GCGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	2 cut(s)	417, 651
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	426, 488
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	70
MalI	GATC	2 cut(s)	419, 653
MboI	GATC	2 cut(s)	417, 651
MboII	GAAGA	6 cut(s)	42, 106, 124, 479, 521, 656
MfeI	CAATTG	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	113, 493
MluCI	AATT	4 cut(s)	118, 248, 512, 673
MlyI	GAGTC	2 cut(s)	404, 554
MseI	TTAA	2 cut(s)	26, 477
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	497, 572, 581
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	2 cut(s)	417, 651
NlaIII	CATG	3 cut(s)	213, 223, 696
NlaIV	GGNNCC	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	634, 699
PleI	GAGTC	2 cut(s)	404, 553
PpsI	GAGTC	2 cut(s)	404, 553
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	637
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	26, 477
SatI	GCNGC	2 cut(s)	633, 698
Sau3AI	GATC	2 cut(s)	417, 651
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	404, 554
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	2 cut(s)	113, 493
SetI	ASST	9 cut(s)	73, 87, 202, 293, 313, 540, 581, 594, 664
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
Sse9I	AATT	4 cut(s)	118, 248, 512, 673
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	430
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	118, 248, 512, 673
Tru1I	TTAA	2 cut(s)	26, 477
Tru9I	TTAA	2 cut(s)	26, 477
TscAI	CASTG	2 cut(s)	366, 372
TseI	GCWGC	2 cut(s)	632, 697
TspDTI	ATGAA	4 cut(s)	522, 534, 656, 686
TspRI	CASTG	2 cut(s)	366, 372
VpaK11BI	GGWCC	1 cut(s)	275
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.