Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

6260547 .. 6265079

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTGAGGATTTGCGGAGAGTCGGGATGGTGGGAGGGGCTGCGCGTCCTTGGATGGGCACGAGATCTCGGATTTCTTCTCTGTGCACCCTTGGATCGTGTGCAGATCGGAGTAGGGTGCTTTGGTGGAAGAAGTTTAATGGTGACAGATCCGAAGGCTCTTACGGCCGGTACGGACGGGCGGTCGACGGTAGACGGTGGCAAGTGTGACAGGCGGTGTGGTAGCAGCGGGAACTCAAGCGAAGGAGTGGCGTTGGGCTCCTTGCGGCAATCGCTTAGACTTGGGCTTGATGGGAGAGGACGACCGACAGAGGGACACAAGCGGACGGAAGGAACCTCTCCAAAGGTCGAAGTCTTCCAAGCTTGTGAAGAACCATCAAGTTGCCAAATAGCCGGTCTCTTCACCTCACCAACTTCGGACAAACAAGGGAAATCACCTGCAAGCTCGAAGTTGTCAAACTCACGGAAAATCAACAAGCACCAAGCAAACGTACTTGATTCATCCGCCATCAAAGCCATACTCGCCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

18.52

Weight (kDa)

9.25

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AccI	GTMKAC	2 cut(s)	185, 192
AccII	CGCG	1 cut(s)	45
AciI	CCGC	7 cut(s)	15, 181, 214, 228, 265, 322, 504
AclWI	GGATC	2 cut(s)	102, 143
AcoI	YGGCCR	1 cut(s)	165
AcvI	CACGTG	1 cut(s)	528
AfaI	GTAC	2 cut(s)	172, 492
AfiI	CCNNNNNNNGG	2 cut(s)	55, 311
AhdI	GACNNNNNGTC	1 cut(s)	181
AluBI	AGCT	2 cut(s)	362, 444
AluI	AGCT	2 cut(s)	362, 444
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	401
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	102, 143
AoxI	GGCC	1 cut(s)	165
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	40, 225
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AspLEI	GCGC	1 cut(s)	45
AsuHPI	GGTGA	5 cut(s)	16, 154, 394, 399, 426
BaeGI	GKGCMC	2 cut(s)	61, 88
BanII	GRGCYC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	60
BbrPI	CACGTG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	27, 237
BccI	CCATC	5 cut(s)	21, 48, 284, 382, 515
BceAI	ACGGC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	41, 226, 266
BlsI	GCNGC	3 cut(s)	42, 227, 267
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	259, 334
BpiI	GAAGAC	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	49, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 311
Bse118I	RCCGGY	2 cut(s)	167, 392
BseDI	CCNNGG	2 cut(s)	49, 90
BseGI	GGATG	3 cut(s)	32, 59, 500
BseLI	CCNNNNNNNGG	2 cut(s)	55, 311
BseSI	GKGCMC	2 cut(s)	61, 88
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	27, 237
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	3 cut(s)	168, 185, 305
BshFI	GGCC	1 cut(s)	167
BsiEI	CGRYCG	3 cut(s)	168, 185, 305
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	168, 393
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	55, 311
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	61, 88, 260
Bsp143I	GATC	4 cut(s)	64, 94, 105, 148
BspACI	CCGC	7 cut(s)	15, 181, 214, 228, 265, 322, 504
BspANI	GGCC	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	259, 334
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	2 cut(s)	102, 143
BspTNI	GGTCTC	1 cut(s)	401
BsrFI	RCCGGY	2 cut(s)	167, 392
BssAI	RCCGGY	2 cut(s)	167, 392
BssECI	CCNNGG	2 cut(s)	49, 90
BssMI	GATC	4 cut(s)	64, 94, 105, 148
BssSI	CACGAG	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	49, 90
Bst2BI	CACGAG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	190, 197
Bst6I	CTCTTC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	32, 59, 500
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	4 cut(s)	67, 97, 108, 151
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	4 cut(s)	64, 94, 105, 148
BstMCI	CGRYCG	3 cut(s)	168, 185, 305
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 271, 512, 521
BstSLI	GKGCMC	2 cut(s)	61, 88
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	27, 237
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	2 cut(s)	64, 148
BstYI	RGATCY	2 cut(s)	64, 148
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	32, 59, 500
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	2 cut(s)	167, 392
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	171, 491
CviJI	RGCY	9 cut(s)	40, 158, 167, 258, 286, 362, 392, 444, 515
CviKI_1	RGCY	9 cut(s)	40, 158, 167, 258, 286, 362, 392, 444, 515
CviQI	GTAC	2 cut(s)	171, 491
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	4 cut(s)	66, 96, 107, 150
DpnII	GATC	4 cut(s)	64, 94, 105, 148
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	165
EagI	CGGCCG	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	404
Eam1105I	GACNNNNNGTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	493
EclXI	CGGCCG	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	49, 90
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	401
Eco52I	CGGCCG	1 cut(s)	165
Eco72I	CACGTG	1 cut(s)	528
EcoT14I	CCWWGG	2 cut(s)	49, 90
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	2 cut(s)	49, 90
FaiI	YATR	1 cut(s)	518
FaqI	GGGAC	1 cut(s)	327
FauI	CCCGC	1 cut(s)	221
FblI	GTMKAC	2 cut(s)	185, 192
Fnu4HI	GCNGC	3 cut(s)	41, 226, 266
FokI	GGATG	3 cut(s)	39, 66, 487
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	41, 226, 266
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	3 cut(s)	41, 226, 266
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	168, 393
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	45
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	2 cut(s)	20, 497
HpaII	CCGG	2 cut(s)	168, 393
HphI	GGTGA	5 cut(s)	16, 154, 394, 399, 426
Hpy166II	GTNNAC	3 cut(s)	86, 186, 193
Hpy188I	TCNGA	4 cut(s)	71, 110, 153, 418
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	3 cut(s)	86, 186, 193
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	148, 236, 323
HpyCH4III	ACNGT	2 cut(s)	190, 197
HpyCH4IV	ACGT	2 cut(s)	489, 527
HpyCH4V	TGCA	3 cut(s)	86, 103, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 271, 512, 521
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	2 cut(s)	489, 527
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	64, 94, 105, 148
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	4 cut(s)	181, 196, 406, 450
Lsp1109I	GCAGC	2 cut(s)	27, 237
MaeII	ACGT	2 cut(s)	489, 527
MaeIII	GTNAC	2 cut(s)	142, 206
MalI	GATC	4 cut(s)	66, 96, 107, 150
MboI	GATC	4 cut(s)	64, 94, 105, 148
MboII	GAAGA	5 cut(s)	68, 141, 346, 380, 391
MflI	RGATCY	2 cut(s)	64, 148
MhlI	GDGCHC	3 cut(s)	61, 88, 260
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	5 cut(s)	28, 290, 304, 346, 415
MseI	TTAA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	168, 393
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	164, 271, 512, 521
NdeII	GATC	4 cut(s)	64, 94, 105, 148
NlaIV	GGNNCC	2 cut(s)	259, 334
NmuCI	GTSAC	2 cut(s)	142, 206
PaqCI	CACCTGC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	3 cut(s)	42, 227, 267
PleI	GAGTC	1 cut(s)	28
PmaCI	CACGTG	1 cut(s)	528
PmlI	CACGTG	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	528
PspCI	CACGTG	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	259, 334
PsuI	RGATCY	2 cut(s)	64, 148
RsaI	GTAC	2 cut(s)	172, 492
RsaNI	GTAC	2 cut(s)	171, 491
SalI	GTCGAC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	3 cut(s)	41, 226, 266
Sau3AI	GATC	4 cut(s)	64, 94, 105, 148
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	3 cut(s)	61, 88, 260
SetI	ASST	8 cut(s)	338, 348, 364, 407, 439, 446, 492, 530
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SsiI	CCGC	7 cut(s)	15, 181, 214, 228, 265, 322, 504
StyI	CCWWGG	2 cut(s)	49, 90
TaaI	ACNGT	2 cut(s)	190, 197
TaiI	ACGT	2 cut(s)	492, 530
TaqI	TCGA	3 cut(s)	185, 348, 446
TaqII	GACCGA	1 cut(s)	319
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	142, 206
TseI	GCWGC	2 cut(s)	40, 225
Tsp45I	GTSAC	2 cut(s)	142, 206
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	3 cut(s)	188, 341, 478
VneI	GTGCAC	1 cut(s)	84
XmiI	GTMKAC	2 cut(s)	185, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.