Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

72306630 .. 72322690

Gene Structure 16061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG515200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAGTTCAAGTCCTAACTCCGCAGCTGTGTACACCGCTCCGGCTTCTCAACAGGGACCTTACGTCCAGGCGCCGCCTCCTGCAGGCTATCCCACTATGAGAAACGGCTCCGACTTGCCCGGGAGCGACGGTCGTGTCGAAACCAAGCCGAAGGGCGATGGCTTCTGGAAGGGTTGCTGTGCCGCCTTAATCAAAATGAGCATCGGCACCATCGAGACCTTCAAAGGTGTCCCCTTTGGCGGCAACCTGAACCAGAAAGGCCCCGCGAAACGAATATATGACCCCATGCCAAATTCGAGCATGACACAATGTAGAGACAGTATTTCAAGGACAGGGCAGCACTTGAAGCCGAGTTTCAACAATCTTGTCTACCTCTGCACAATCAGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAATCTCAATGAGAAGAGGCTTTATGAGGGCACTAACAATTGTCCACCCCAAGTCCCCAAAGTTATAGATGGAAAAGCGGCCAACGAAATCCAAAACCTTATGGAACAAGATTATGAAATTGGGTCAACCATTCGAGAGGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAGTGATGGCATCTACCAGCACAACGAAACGGGTCAAAAGAAGGCCATGCCAATACTGAAAGGCACTTTGCATTGTGTCTTCATCAAGATTGGGCTCAAAGATGTAATTTGGCTGGCAAACCAACTTCATAGTTTCCAGATCAGACACATCAATGGAAACGTCAACTTTCTTACCGATGCTATTGCTAATACTAGCCCCTTCAAACTTGTCATGCTCATTACTTTAATAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

276

Amino Acids

30.48

Weight (kDa)

9.16

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	157 - 198	6.5e-06	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	70, 206
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	266
AciI	CCGC	7 cut(s)	21, 36, 74, 183, 240, 264, 503
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	83, 239
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	9, 223, 327, 346, 358, 799
AhdI	GACNNNNNGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	209, 309
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	3 cut(s)	259, 504, 639
ApeKI	GCWGC	2 cut(s)	23, 337
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	56, 260
AsuC2I	CCSGG	2 cut(s)	120, 121
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	458
BanI	GGYRCC	2 cut(s)	70, 206
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	35, 349
BccI	CCATC	4 cut(s)	152, 218, 488, 596
BceAI	ACGGC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	2 cut(s)	120, 121
BcoDI	GTCTC	2 cut(s)	209, 309
BfaI	CTAG	2 cut(s)	789, 829
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	6 cut(s)	24, 74, 183, 241, 338, 504
BlsI	GCNGC	6 cut(s)	25, 75, 184, 242, 339, 505
Bme1390I	CCNGG	3 cut(s)	68, 120, 121
Bme18I	GGWCC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	56, 260
BmiI	GGNNCC	5 cut(s)	57, 72, 109, 208, 262
BmrFI	CCNGG	3 cut(s)	68, 120, 121
BmsI	GCATC	3 cut(s)	210, 615, 763
BpiI	GAAGAC	1 cut(s)	667
BpuMI	CCSGG	2 cut(s)	120, 121
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 239
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	83, 239
BseMII	CTCAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	35, 349
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	261, 506, 641
BshNI	GGYRCC	2 cut(s)	70, 206
BsiEI	CGRYCG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	41, 120
BslFI	GGGAC	3 cut(s)	69, 215, 464
BslI	CCNNNNNNNGG	2 cut(s)	83, 239
BsmAI	GTCTC	2 cut(s)	209, 309
BsmFI	GGGAC	3 cut(s)	69, 215, 464
BsnI	GGCC	3 cut(s)	261, 506, 641
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	458, 693
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	735
BspACI	CCGC	7 cut(s)	21, 36, 74, 183, 240, 264, 503
BspANI	GGCC	3 cut(s)	261, 506, 641
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	5 cut(s)	57, 72, 109, 208, 262
BspMAI	CTGCAG	1 cut(s)	85
BspT107I	GGYRCC	2 cut(s)	70, 206
BspTNI	GGTCTC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	1 cut(s)	735
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	131, 320
Bst6I	CTCTTC	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	85, 711
BstDEI	CTNAG	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	738
BstMAI	GTCTC	2 cut(s)	209, 309
BstMBI	GATC	1 cut(s)	735
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	3 cut(s)	66, 118, 119
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	458
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	35, 349
BstV2I	GAAGAC	1 cut(s)	667
BsuRI	GGCC	3 cut(s)	261, 506, 641
BtgZI	GCGATG	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	85, 711
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	56, 260
Cfr9I	CCCGGG	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	6 cut(s)	286, 301, 575, 585, 643, 808
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	390
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	1 cut(s)	737
DpnII	GATC	1 cut(s)	735
DrdI	GACNNNNNNGTC	1 cut(s)	134
DriI	GACNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	434
Eam1105I	GACNNNNNGTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	693
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	2 cut(s)	56, 260
EcoRII	CCWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	693
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
FaeI	CATG	6 cut(s)	289, 304, 578, 588, 646, 811
FaqI	GGGAC	3 cut(s)	69, 215, 464
FatI	CATG	6 cut(s)	285, 300, 574, 584, 642, 807
FauI	CCCGC	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	6 cut(s)	24, 74, 183, 241, 338, 504
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	6 cut(s)	24, 74, 183, 241, 338, 504
FspBI	CTAG	2 cut(s)	789, 829
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	6 cut(s)	24, 74, 183, 241, 338, 504
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	261, 506, 641
HapII	CCGG	2 cut(s)	41, 120
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	6 cut(s)	289, 304, 578, 588, 646, 811
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	2 cut(s)	552, 760
HindII	GTYRAC	2 cut(s)	552, 760
HpaII	CCGG	2 cut(s)	41, 120
Hpy166II	GTNNAC	6 cut(s)	31, 33, 370, 470, 552, 760
Hpy188I	TCNGA	2 cut(s)	112, 740
Hpy188III	TCNNGA	6 cut(s)	166, 214, 385, 560, 682, 733
Hpy8I	GTNNAC	6 cut(s)	31, 33, 370, 470, 552, 760
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	5 cut(s)	145, 163, 229, 631, 805
HpyCH4III	ACNGT	2 cut(s)	131, 320
HpyCH4IV	ACGT	3 cut(s)	63, 415, 756
HpyCH4V	TGCA	4 cut(s)	83, 378, 593, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	3 cut(s)	63, 415, 756
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	6 cut(s)	289, 304, 578, 588, 646, 811
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	735
LmnI	GCTCC	3 cut(s)	43, 113, 123
Lsp1109I	GCAGC	2 cut(s)	35, 349
LweI	GCATC	3 cut(s)	210, 615, 763
MaeI	CTAG	2 cut(s)	789, 829
MaeII	ACGT	3 cut(s)	63, 415, 756
MalI	GATC	1 cut(s)	737
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	1 cut(s)	735
MboII	GAAGA	2 cut(s)	451, 667
MfeI	CAATTG	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	458, 693
MluCI	AATT	4 cut(s)	292, 463, 543, 702
Mly113I	GGCGCC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	87, 383, 435, 445, 556
MseI	TTAA	2 cut(s)	188, 821
MslI	CAYNNNNRTG	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	41, 120
MspR9I	CCNGG	3 cut(s)	68, 120, 121
MunI	CAATTG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	346
NarI	GGCGCC	1 cut(s)	71
NciI	CCSGG	2 cut(s)	120, 121
NdeII	GATC	1 cut(s)	735
NlaIII	CATG	6 cut(s)	289, 304, 578, 588, 646, 811
NlaIV	GGNNCC	5 cut(s)	57, 72, 109, 208, 262
NmeAIII	GCCGAG	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 210
PkrI	GCNGC	6 cut(s)	25, 75, 184, 242, 339, 505
PluTI	GGCGCC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	5 cut(s)	57, 72, 109, 208, 262
PspPI	GGNCC	2 cut(s)	56, 260
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	188, 821
SatI	GCNGC	6 cut(s)	24, 74, 183, 241, 338, 504
Sau3AI	GATC	1 cut(s)	735
Sau96I	GGNCC	2 cut(s)	56, 260
SbfI	CCTGCAGG	1 cut(s)	85
ScrFI	CCNGG	3 cut(s)	68, 120, 121
SdaI	CCTGCAGG	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	458, 693
SfaNI	GCATC	3 cut(s)	210, 615, 763
SfcI	CTRYAG	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	72
SinI	GGWCC	1 cut(s)	56
SmaI	CCCGGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	747
Sse8387I	CCTGCAGG	1 cut(s)	85
Sse9I	AATT	4 cut(s)	292, 463, 543, 702
SsiI	CCGC	7 cut(s)	21, 36, 74, 183, 240, 264, 503
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	789, 829
StyD4I	CCNGG	3 cut(s)	66, 118, 119
TaaI	ACNGT	2 cut(s)	131, 320
TaiI	ACGT	3 cut(s)	66, 418, 759
TaqI	TCGA	4 cut(s)	138, 213, 296, 559
TasI	AATT	4 cut(s)	292, 463, 543, 702
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	4 cut(s)	76, 185, 243, 506
Tru1I	TTAA	2 cut(s)	188, 821
Tru9I	TTAA	2 cut(s)	188, 821
TseI	GCWGC	2 cut(s)	23, 337
TspDTI	ATGAA	3 cut(s)	555, 667, 713
TspMI	CCCGGG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	292
XmaI	CCCGGG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	789, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.