Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

49329739 .. 49333465

Gene Structure 3727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGACTTGGTTGAAACTTGTGCTTTGTAGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAAGCTCAATGAGAAGAGGCTTTATGTGGGTACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCGACTGGAGGAAGAGTTTTTTTAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAACATCTCTACAACAAGGTTCCGGATGCAACTAGTGACCATGAAATTCGGAGGGAGTCTATAGGAGAAGAAGGGAATCCAGATTCAAGCAGTGATAGAGCAATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

107

Amino Acids

12.72

Weight (kDa)

9.1

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	258
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	13, 124, 300
AhlI	ACTAGT	1 cut(s)	245
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	187
Aor13HI	TCCGGA	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	187
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	235
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	25
BspEI	TCCGGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	77, 155
BstDEI	CTNAG	2 cut(s)	33, 188
BstF5I	GGATG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	4 cut(s)	73, 88, 194, 321
CviKI_1	RGCY	4 cut(s)	73, 88, 194, 321
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	33, 188
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	77, 155
EarI	CTCTTC	2 cut(s)	77, 155
FaeI	CATG	1 cut(s)	257
FaiI	YATR	6 cut(s)	48, 93, 201, 213, 255, 275
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	253
FokI	GGATG	1 cut(s)	251
FspBI	CTAG	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	175
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	1 cut(s)	257
HinfI	GANTC	3 cut(s)	269, 289, 296
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	236, 293
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	33, 188
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	3 cut(s)	139, 249, 306
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	5 cut(s)	94, 112, 172, 215, 293
MfeI	CAATTG	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	3 cut(s)	106, 206, 258
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	78, 150, 173, 258
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	1 cut(s)	171
MspI	CCGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	191
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	289, 296
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	234
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	171
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	3 cut(s)	61, 75, 234
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	273
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	3 cut(s)	106, 206, 258
SspMI	CTAG	1 cut(s)	246
TaiI	ACGT	1 cut(s)	61
TasI	AATT	3 cut(s)	106, 206, 258
TfiI	GAWTC	2 cut(s)	289, 296
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	216, 228, 270
TspRI	CASTG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	258
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.