Rh7BG250000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001850
Physical Location & Seq
Reverse (-)
22620304 .. 22624518
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG250000.1

Sequence Viewer

Length: 312 bp
ATGGAAAAGAGGTCAACCATTCGAGAGGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAATTCGCCTATCAGAATATCCAATCTTGCCTCTGGAGGAGTTCTCAACGACCAGGCAGTGCTAGTGCGCACTTTCAATGATAAGATGCAGATTTTAGATGGACAGGACTCTGTGATCCTGAGGAGCCTTGGACATATCCAGAGGAAACTTGATAAACTGGAGGAAGAGTTTTTCAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAACATCTCTACAACAAGCAAATCGTGCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.98

Weight (kDa)

9.64

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 128
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 61
AgsI TTSAA 2 cut(s) 136, 235
AjnI CCWGG 1 cut(s) 111
Alw21I GWGCWC 2 cut(s) 250, 306
AlwI GGATC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 1 cut(s) 129
AxyI CCTNAGG 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 250, 306
BccI CCATC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 2 cut(s) 114, 239
BpuEI CTTGAG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bse1I ACTGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 3 cut(s) 111, 196, 258
BsiHKAI GWGCWC 2 cut(s) 250, 306
Bsp1286I GDGCHC 2 cut(s) 250, 306
Bsp143I GATC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 185
BspPI GGATC 1 cut(s) 169
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 179, 251
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 254, 301
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
CfoI GCGC 1 cut(s) 129
CviAII CATG 2 cut(s) 38, 48
CviJI RGCY 2 cut(s) 186, 257
CviKI_1 RGCY 2 cut(s) 186, 257
DdeI CTNAG 2 cut(s) 179, 251
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 41, 51
FaiI YATR 5 cut(s) 39, 49, 195, 264, 276
FatI CATG 2 cut(s) 37, 47
FspAI RTGCGCAY 1 cut(s) 128
FspBI CTAG 1 cut(s) 122
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 1 cut(s) 128
GsuI CTGGAG 2 cut(s) 114, 239
HhaI GCGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 41, 51
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 4 cut(s) 23, 93, 178, 199
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 56, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 301
HpyF3I CTNAG 2 cut(s) 179, 251
Hsp92II CATG 2 cut(s) 41, 51
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 183, 245
LpnPI CCDG 7 cut(s) 78, 98, 125, 149, 191, 203, 212
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 122
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 236, 278
MhlI GDGCHC 2 cut(s) 250, 306
MluCI AATT 2 cut(s) 61, 269
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 8 cut(s) 3, 19, 89, 100, 174, 195, 214, 236
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 254, 301
NdeII GATC 1 cut(s) 174
NlaIII CATG 2 cut(s) 41, 51
NlaIV GGNNCC 1 cut(s) 185
NsbI TGCGCA 1 cut(s) 128
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 174
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 2 cut(s) 250, 306
SetI ASST 2 cut(s) 14, 30
SfaNI GCATC 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 61, 269
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 187
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 61, 269
TscAI CASTG 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 279, 291
TspRI CASTG 1 cut(s) 123
XapI RAATTY 1 cut(s) 61
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.