Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

68388503 .. 68399749

Gene Structure 11247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG478500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATTGACGAGGATTTACCCATTTTAAGAAAAGCAATAGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAAGCTCAATGAGAAGAGGCTTTATGAGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCAGAGTTATAGATGGAAAAGTGGTTTCTGAACTTATTAGGAGGATGATTCCAAGTCATACTAGTATGATTGTTCCAGATGATACATGTGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAATTCACCTATCAGAATATCCAATCTTGCCTCTGGAGGAGTTCTCAACGACCAGGCAGTGCCAGTGAGCGCTTTCAATGATAAGATGCAGATTTTAGATGGGCAGGACTCTGTGATCCTGAGGAGCCTTGGACATATCCAGAGGAAACTTGATAAACTGGAGGAAGAGTTTTTTAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAACATCTCTACAACAAGAGTCTTAGGGTGATTGACAAAATATTCAGTAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

184

Amino Acids

21.18

Weight (kDa)

8.97

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	6 - 93	1.8e-08	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	283
AfeI	AGCGCT	1 cut(s)	352
AflIII	ACRYGT	2 cut(s)	68, 245
AgsI	TTSAA	2 cut(s)	136, 358
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	472
AlwI	GGATC	1 cut(s)	391
Aor51HI	AGCGCT	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	279, 538
AxyI	CCTNAGG	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	113
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
Bbv12I	GWGCWC	1 cut(s)	472
BccI	CCATC	2 cut(s)	167, 374
BciT130I	CCWGG	1 cut(s)	335
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpmI	CTGGAG	2 cut(s)	336, 461
BsaJI	CCNNGG	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bse1I	ACTGG	2 cut(s)	344, 444
Bse21I	CCTNAGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	36, 392
BseNI	ACTGG	2 cut(s)	344, 444
BseRI	GAGGAG	3 cut(s)	333, 418, 480
BseSI	GKGCMC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	472
BslFI	GGGAC	2 cut(s)	55, 143
BsmFI	GGGAC	2 cut(s)	55, 143
Bsp1286I	GDGCHC	2 cut(s)	113, 472
Bsp143I	GATC	1 cut(s)	396
BspCNI	CTCAG	2 cut(s)	37, 393
BspLI	GGNNCC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	344, 444
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	335
Bst6I	CTCTTC	2 cut(s)	89, 441
BstDEI	CTNAG	4 cut(s)	45, 401, 473, 521
BstF5I	GGATG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	345, 351
CfoI	GCGC	1 cut(s)	353
CviAII	CATG	3 cut(s)	246, 260, 270
CviJI	RGCY	4 cut(s)	85, 100, 408, 479
CviKI_1	RGCY	4 cut(s)	85, 100, 408, 479
DdeI	CTNAG	4 cut(s)	45, 401, 473, 521
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
DraI	TTTAAA	1 cut(s)	457
Eam1104I	CTCTTC	2 cut(s)	89, 441
EarI	CTCTTC	2 cut(s)	89, 441
Eco130I	CCWWGG	1 cut(s)	409
Eco47III	AGCGCT	1 cut(s)	352
Eco81I	CCTNAGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	3 cut(s)	249, 263, 273
FaqI	GGGAC	2 cut(s)	55, 143
FatI	CATG	3 cut(s)	245, 259, 269
FokI	GGATG	1 cut(s)	217
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	352
GsuI	CTGGAG	2 cut(s)	336, 461
HaeII	RGCGCY	1 cut(s)	354
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	3 cut(s)	249, 263, 273
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	3 cut(s)	208, 389, 517
HphI	GGTGA	2 cut(s)	279, 538
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	190, 296
Hpy188III	TCNNGA	4 cut(s)	236, 315, 400, 421
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	278, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	4 cut(s)	45, 401, 473, 521
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	249, 263, 273
HspAI	GCGC	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	405, 467
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	70
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	4 cut(s)	106, 124, 458, 500
MfeI	CAATTG	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	113, 472
MluCI	AATT	3 cut(s)	118, 283, 491
MlyI	GAGTC	2 cut(s)	383, 526
MseI	TTAA	2 cut(s)	26, 456
MspR9I	CCNGG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	476
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	3 cut(s)	249, 263, 273
NlaIV	GGNNCC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	249
PciI	ACATGT	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	383, 525
PpsI	GAGTC	2 cut(s)	383, 525
PscI	ACATGT	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	26, 456
Sau3AI	GATC	1 cut(s)	396
SchI	GAGTC	2 cut(s)	383, 526
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	113, 472
SetI	ASST	3 cut(s)	73, 87, 292
SfaNI	GCATC	1 cut(s)	357
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	3 cut(s)	118, 283, 491
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	409
TaiI	ACGT	1 cut(s)	73
TasI	AATT	3 cut(s)	118, 283, 491
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	26, 456
Tru9I	TTAA	2 cut(s)	26, 456
TscAI	CASTG	2 cut(s)	345, 351
TspDTI	ATGAA	2 cut(s)	501, 513
TspRI	CASTG	2 cut(s)	345, 351
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	249
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.