Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003837.1

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

37169 .. 38564

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003837.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggattcttcccgaaaatcagggtgtcagccccatgatttctgcttcctaacactccatctgacagagttggtgacagatgtcacaactatgtggtctcttcctctcacgtcacttttagaccatgccctccgaccatacctatcatcagagcgtgacaccttgcctaatagagacatcaaggggtccaagatagatggtgacaataagggatttaaactcgacttctattttgaacctaataacttttttatgaacccggttttgaccaagacatatcatatggttgatgaaggtgtacccattctagcaaaagcaatagggacggaaattgaatggtatccaggtcgttgcttgacaaagaacaccattgagaagaatagtaagaaaggatcttttcccaaaggaactgaaaatcgtaaaagtttcttcaactttttcgatacatatcaaatccttgaagatattgatgctgttagaaaccaaatggaaatagattatgaaattgggtcaacaattcgagtcatggtcatcccctatgctgtttcttggtttacgggggagtcttggagaagtacggatgaatacagtgacactgaggatgatgatgacgaagatgatgacgaggatgaggatgatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

214

Amino Acids

24.77

Weight (kDa)

4.41

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	400
AfaI	GTAC	2 cut(s)	300, 577
AgsI	TTSAA	4 cut(s)	236, 335, 433, 461
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	102, 168
AlwI	GGATC	1 cut(s)	400
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspS9I	GGNCC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	85, 212
AvaII	GGWCC	1 cut(s)	186
BccI	CCATC	2 cut(s)	66, 191
BciT130I	CCWGG	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	102, 168
BfaI	CTAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	260, 345
Bme18I	GGWCC	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	260, 345
BmsI	GCATC	1 cut(s)	460
BoxI	GACNNNNGTC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	345
BseGI	GGATG	5 cut(s)	531, 586, 607, 634, 640
BseJI	GATNNNNATC	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	102, 168
BsmFI	GGGAC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	102
BssMI	GATC	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	597
BstF5I	GGATG	5 cut(s)	531, 586, 607, 634, 640
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	2 cut(s)	102, 168
BstMBI	GATC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	345
BstPAI	GACNNNNGTC	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	258, 343
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	5 cut(s)	531, 586, 607, 634, 640
BtsIMutI	CAGTG	2 cut(s)	594, 595
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	299, 576
CviAII	CATG	3 cut(s)	35, 125, 526
CviJI	RGCY	1 cut(s)	31
CviKI_1	RGCY	1 cut(s)	31
CviQI	GTAC	2 cut(s)	299, 576
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
DraI	TTTAAA	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	343
FaeI	CATG	3 cut(s)	38, 128, 529
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	3 cut(s)	34, 124, 525
FauNDI	CATATG	1 cut(s)	282
FokI	GGATG	4 cut(s)	518, 593, 614, 641
FspBI	CTAG	1 cut(s)	308
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	3 cut(s)	38, 128, 529
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	3 cut(s)	5, 522, 563
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	2 cut(s)	85, 212
Hpy166II	GTNNAC	3 cut(s)	299, 513, 555
Hpy188I	TCNGA	3 cut(s)	63, 134, 151
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	3 cut(s)	299, 513, 555
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	38, 128, 529
Kzo9I	GATC	1 cut(s)	392
LpnPI	CCDG	4 cut(s)	6, 273, 330, 357
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	6 cut(s)	73, 82, 111, 155, 200, 590
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	5 cut(s)	92, 388, 421, 473, 626
MflI	RGATCY	1 cut(s)	392
MluCI	AATT	3 cut(s)	330, 504, 516
MlyI	GAGTC	2 cut(s)	531, 572
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	114, 140, 592, 619, 625
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	260, 345
MvaI	CCWGG	1 cut(s)	345
NciI	CCSGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	282
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	3 cut(s)	38, 128, 529
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	6 cut(s)	73, 82, 111, 155, 200, 590
PfeI	GAWTC	1 cut(s)	5
PleI	GAGTC	2 cut(s)	530, 571
PpsI	GAGTC	2 cut(s)	530, 571
PshAI	GACNNNNGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	392
RsaI	GTAC	2 cut(s)	300, 577
RsaNI	GTAC	2 cut(s)	299, 576
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	2 cut(s)	531, 572
ScrFI	CCNGG	2 cut(s)	260, 345
SetI	ASST	6 cut(s)	113, 144, 164, 241, 298, 349
SfaNI	GCATC	1 cut(s)	460
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	330, 504, 516
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	258, 343
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	3 cut(s)	222, 441, 520
TasI	AATT	3 cut(s)	330, 504, 516
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	595, 601
TseFI	GTSAC	6 cut(s)	73, 82, 111, 155, 200, 590
Tsp45I	GTSAC	6 cut(s)	73, 82, 111, 155, 200, 590
TspDTI	ATGAA	4 cut(s)	269, 306, 516, 597
TspGWI	ACGGA	2 cut(s)	341, 593
TspRI	CASTG	2 cut(s)	595, 601
VpaK11BI	GGWCC	1 cut(s)	186
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.