Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

69103172 .. 69110254

Gene Structure 7083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG511800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCTGATGACTTGGTCAAAATATCTTCTCCTCTGCTCCTGTTGCCTTCTCCACTGCTCCTATTGTTGCTTTTCATATATCTATTTCAAGGATTAGCTGGAGACGACGAAGAAGGATTGACAAATAAACGATTGGCTTTTCGTATTTCTGGGTCTGTCTTAACAAAGACTTATGACATGATTGACGAGGATTTACCCATTTTAAGAAAAGCAATAGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAAGCTCAATGAGAAGAGGCTTTATGAGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCAGAGTTATAGATGGAAAAGTGGTTTCTGAACTTATTAGGAGGATGATTCCAAGTCATACTAGTATGATTGTTCCAGATGATACATGTGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAATTCACCTATCAGAATATCCAATCTTGCCTCTGGAGGAGTTCTCAACGACCAGGCAGTGCCAGTGAGCGCTTTCAATGATAAGATGCAGATTTTAGATGGGCAGGACTCTGTGATCCTGAGGAGCCTTGGACATATCCAGAGGAAACTTGATAAACTGGAGGAAGAGTTTTTTAAAAAGAGAGGAGCACTTAGAGCCAAGTATGAAGAATTGTATGAACATCTCTACAACAAGGTGCAGGCAAATGGTATGGCAGCATACTTTGTGACATTGACTACATATCTTGGCCTTTGGTGTGGCAGAATATTACTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

258

Amino Acids

29.24

Weight (kDa)

7.74

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	52 - 152	1.5e-10	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	460
AfeI	AGCGCT	1 cut(s)	529
AflIII	ACRYGT	2 cut(s)	245, 422
AgsI	TTSAA	3 cut(s)	89, 313, 535
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	2 cut(s)	98, 262
AluI	AGCT	2 cut(s)	98, 262
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	568
Aor51HI	AGCGCT	1 cut(s)	529
AoxI	GGCC	1 cut(s)	745
ApeKI	GCWGC	1 cut(s)	713
ApoI	RAATTY	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	456
AxyI	CCTNAGG	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	290
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	1 cut(s)	725
BccI	CCATC	2 cut(s)	344, 551
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	96
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	531
BisI	GCNGC	1 cut(s)	714
BlsI	GCNGC	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	584
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	534
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	3 cut(s)	120, 513, 638
BsaJI	CCNNGG	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bse1I	ACTGG	2 cut(s)	521, 621
Bse21I	CCTNAGG	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	213, 569
BseNI	ACTGG	2 cut(s)	521, 621
BseRI	GAGGAG	4 cut(s)	21, 510, 595, 657
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	725
BsgI	GTGCAG	1 cut(s)	716
BshFI	GGCC	1 cut(s)	747
BsiHKAI	GWGCWC	1 cut(s)	649
BslFI	GGGAC	2 cut(s)	232, 320
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	232, 320
BsnI	GGCC	1 cut(s)	747
Bsp1286I	GDGCHC	2 cut(s)	290, 649
Bsp143I	GATC	1 cut(s)	573
BspANI	GGCC	1 cut(s)	747
BspCNI	CTCAG	2 cut(s)	214, 570
BspLI	GGNNCC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	521, 621
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	1 cut(s)	512
Bst6I	CTCTTC	2 cut(s)	266, 618
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	3 cut(s)	222, 578, 650
BstF5I	GGATG	1 cut(s)	387
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	1 cut(s)	576
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	573
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 653
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	725
Bsu36I	CCTNAGG	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	2 cut(s)	53, 522
BtsIMutI	CAGTG	3 cut(s)	53, 522, 528
Cac8I	GCNNGC	1 cut(s)	699
CfoI	GCGC	1 cut(s)	530
CviAII	CATG	4 cut(s)	178, 423, 437, 447
CviJI	RGCY	7 cut(s)	98, 137, 262, 277, 585, 656, 747
CviKI_1	RGCY	7 cut(s)	98, 137, 262, 277, 585, 656, 747
DdeI	CTNAG	3 cut(s)	222, 578, 650
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
DraI	TTTAAA	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	266, 618
EarI	CTCTTC	2 cut(s)	266, 618
Eco130I	CCWWGG	1 cut(s)	586
Eco47III	AGCGCT	1 cut(s)	529
Eco81I	CCTNAGG	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	4 cut(s)	181, 426, 440, 450
FaqI	GGGAC	2 cut(s)	232, 320
FatI	CATG	4 cut(s)	177, 422, 436, 446
Fnu4HI	GCNGC	1 cut(s)	714
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	714
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	1 cut(s)	714
GsuI	CTGGAG	3 cut(s)	120, 513, 638
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	747
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	4 cut(s)	181, 426, 440, 450
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HinfI	GANTC	2 cut(s)	385, 566
HphI	GGTGA	1 cut(s)	456
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	3 cut(s)	7, 367, 473
Hpy188III	TCNNGA	4 cut(s)	413, 492, 577, 598
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	57, 107
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	455, 547, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 653
HpyF3I	CTNAG	3 cut(s)	222, 578, 650
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	4 cut(s)	181, 426, 440, 450
HspAI	GCGC	1 cut(s)	528
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	4 cut(s)	42, 63, 582, 644
Lsp1109I	GCAGC	1 cut(s)	725
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	1 cut(s)	575
MboI	GATC	1 cut(s)	573
MboII	GAAGA	6 cut(s)	18, 122, 283, 301, 635, 677
MfeI	CAATTG	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	290, 649
MluCI	AATT	3 cut(s)	295, 460, 668
MlyI	GAGTC	1 cut(s)	560
MseI	TTAA	3 cut(s)	161, 203, 633
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	43, 653
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	4 cut(s)	181, 426, 440, 450
NlaIV	GGNNCC	1 cut(s)	584
NmuCI	GTSAC	1 cut(s)	724
NspI	RCATGY	1 cut(s)	426
PciI	ACATGT	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	715
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PscI	ACATGT	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	584
PsyI	GACNNNGTC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	161, 203, 633
SatI	GCNGC	1 cut(s)	714
Sau3AI	GATC	1 cut(s)	573
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	290, 649
SetI	ASST	5 cut(s)	100, 250, 264, 469, 696
SfaNI	GCATC	1 cut(s)	534
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	3 cut(s)	295, 460, 668
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	586
TaiI	ACGT	1 cut(s)	250
TasI	AATT	3 cut(s)	295, 460, 668
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	3 cut(s)	161, 203, 633
Tru9I	TTAA	3 cut(s)	161, 203, 633
TscAI	CASTG	3 cut(s)	60, 522, 528
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	1 cut(s)	713
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	3 cut(s)	64, 678, 690
TspRI	CASTG	3 cut(s)	60, 522, 528
Tth111I	GACNNNGTC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.