Rroxscaffold_5G00337950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001850
Physical Location & Seq
Forward (+)
6158484 .. 6164618
6135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337950.1

Sequence Viewer

Length: 798 bp
ATGGATGAGTGGGTAACGTCATGGCTAATTAATAAAGGAAGATCAACAGGCCTACCAACCTCTACCAACAGCTCGCGCCATATGAAGGTTGCTCGCGTCAGATCAAGAGAAGGACTTCAGCGGAAGGAGAGAAAAATCGGTCCCAAAGTTCATAAGTCTTCAAGCGCGTTAAGAGCCTTCAAGTCGCCAAATAGCCGGTTCATCACCAACCTCAAGCCAAAGCACTCGTCACGTGTCAACACTCGTGGTCATCATACAACTCAAGATCAAGCGCCAATCACCCTTGAATCAAGTATACCAACGAGGACAAACGACAAAGGAGGACGACAGACAGAGGGACGCAAGCGGACGGAAGAAACCTCTCAAAAGCTCGAAGTCTCTCAAGCTCGTGAAGAACCATCAAGCTGTCAAATAGCCGGTCTCTTCACCTCACCGACTTCGGACAAGCAGGGGAAATCACCTACAAGCTCGGAAGTCGTCAAACACGCAGAGGATCAACAAGCACCAAGCAAACGTGCCGATTCATCCGCCATCAAAGCCATACTCGCCACGTTGGGGAGTATCAAGGTGCTTACAAGGTTAGAACTACTCATGGAAAGAAACACATTTGAAGTTTTTTGTTTCATTTTATTCAAGAACATATGTGAGCTTACCCGTCTTCTTTATCCTCCATTGTATATAGATAATCGAGGACTTCGGATAATTATGGCCTTGAGAGGGTTCTTGATACCTCAATCACAGAGATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

30.01

Weight (kDa)

10.43

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 295
AccII CGCG 3 cut(s) 76, 96, 167
AciI CCGC 3 cut(s) 121, 346, 528
AclWI GGATC 1 cut(s) 501
AcuI CTGAAG 1 cut(s) 101
AcvI CACGTG 1 cut(s) 233
AfiI CCNNNNNNNGG 3 cut(s) 85, 555, 717
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 6 cut(s) 162, 181, 287, 611, 634, 751
AluBI AGCT 6 cut(s) 72, 370, 386, 405, 468, 649
AluI AGCT 6 cut(s) 72, 370, 386, 405, 468, 649
Alw26I GTCTC 2 cut(s) 382, 425
AlwI GGATC 1 cut(s) 501
AoxI GGCC 2 cut(s) 49, 708
ArsI GACNNNNNNTTYG 4 cut(s) 212, 244, 403, 435
AseI ATTAAT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 3 cut(s) 78, 167, 274
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 5 cut(s) 196, 271, 418, 423, 450
AvaII GGWCC 1 cut(s) 140
BauI CACGAG 2 cut(s) 243, 387
BbrPI CACGTG 1 cut(s) 233
BbsI GAAGAC 2 cut(s) 150, 650
BccI CCATC 2 cut(s) 406, 539
BcoDI GTCTC 2 cut(s) 382, 425
BfoI RGCGCY 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 142
BmsI GCATC 1 cut(s) 734
BpiI GAAGAC 2 cut(s) 150, 650
BpuEI CTTGAG 4 cut(s) 197, 246, 366, 733
BsaAI YACGTR 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 425
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 555, 717
Bse118I RCCGGY 2 cut(s) 195, 416
BseGI GGATG 2 cut(s) 10, 524
BseLI CCNNNNNNNGG 3 cut(s) 85, 555, 717
Bsh1236I CGCG 3 cut(s) 76, 96, 167
BshFI GGCC 2 cut(s) 51, 710
BsiSI CCGG 2 cut(s) 196, 417
BslFI GGGAC 2 cut(s) 126, 351
BslI CCNNNNNNNGG 3 cut(s) 85, 555, 717
BsmAI GTCTC 2 cut(s) 382, 425
BsmFI GGGAC 2 cut(s) 126, 351
BsnI GGCC 2 cut(s) 51, 710
Bso31I GGTCTC 1 cut(s) 425
Bsp143I GATC 4 cut(s) 41, 101, 265, 493
BspACI CCGC 3 cut(s) 121, 346, 528
BspANI GGCC 2 cut(s) 51, 710
BspFNI CGCG 3 cut(s) 76, 96, 167
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 1 cut(s) 501
BspTNI GGTCTC 1 cut(s) 425
BsrFI RCCGGY 2 cut(s) 195, 416
BssAI RCCGGY 2 cut(s) 195, 416
BssMI GATC 4 cut(s) 41, 101, 265, 493
BssNAI GTATAC 1 cut(s) 296
BssSI CACGAG 2 cut(s) 243, 387
Bst1107I GTATAC 1 cut(s) 296
Bst2BI CACGAG 2 cut(s) 243, 387
Bst6I CTCTTC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 74, 94, 344
BstF5I GGATG 2 cut(s) 10, 524
BstFNI CGCG 3 cut(s) 76, 96, 167
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 3 cut(s) 78, 167, 274
BstKTI GATC 4 cut(s) 44, 104, 268, 496
BstMAI GTCTC 2 cut(s) 382, 425
BstMBI GATC 4 cut(s) 41, 101, 265, 493
BstMWI GCNNNNNNNGC 3 cut(s) 173, 536, 545
BstUI CGCG 3 cut(s) 76, 96, 167
BstV2I GAAGAC 2 cut(s) 150, 650
BstZ17I GTATAC 1 cut(s) 296
BsuRI GGCC 2 cut(s) 51, 710
BtsCI GGATG 2 cut(s) 10, 524
Cac8I GCNNGC 3 cut(s) 74, 94, 344
CfoI GCGC 3 cut(s) 78, 167, 274
Cfr10I RCCGGY 2 cut(s) 195, 416
Cfr13I GGNCC 1 cut(s) 140
CseI GACGC 2 cut(s) 85, 348
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 4 cut(s) 21, 592, 773, 779
DpnI GATC 4 cut(s) 43, 103, 267, 495
DpnII GATC 4 cut(s) 41, 101, 265, 493
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
EciI GGCGGA 1 cut(s) 517
Eco147I AGGCCT 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 101
Eco72I CACGTG 1 cut(s) 233
FaeI CATG 4 cut(s) 24, 595, 776, 782
FaqI GGGAC 2 cut(s) 126, 351
FatI CATG 4 cut(s) 20, 591, 772, 778
FauNDI CATATG 2 cut(s) 81, 641
FblI GTMKAC 1 cut(s) 295
FokI GGATG 2 cut(s) 17, 511
GlaI GCGC 3 cut(s) 77, 166, 273
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 2 cut(s) 51, 710
HapII CCGG 2 cut(s) 196, 417
HgaI GACGC 2 cut(s) 85, 348
HhaI GCGC 3 cut(s) 78, 167, 274
Hin1II CATG 4 cut(s) 24, 595, 776, 782
Hin6I GCGC 3 cut(s) 76, 165, 272
HinP1I GCGC 3 cut(s) 76, 165, 272
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 2 cut(s) 287, 521
HpaII CCGG 2 cut(s) 196, 417
HphI GGTGA 5 cut(s) 196, 271, 418, 423, 450
Hpy166II GTNNAC 2 cut(s) 238, 296
Hpy188I TCNGA 4 cut(s) 101, 442, 472, 699
Hpy188III TCNNGA 5 cut(s) 105, 263, 389, 634, 724
Hpy8I GTNNAC 2 cut(s) 238, 296
HpyAV CCTTC 4 cut(s) 79, 104, 118, 187
HpyCH4IV ACGT 4 cut(s) 17, 232, 514, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 536, 545
HpySE526I ACGT 4 cut(s) 17, 232, 514, 551
Hsp92II CATG 4 cut(s) 24, 595, 776, 782
HspAI GCGC 3 cut(s) 76, 165, 272
Kzo9I GATC 4 cut(s) 41, 101, 265, 493
LpnPI CCDG 4 cut(s) 33, 209, 430, 434
LweI GCATC 1 cut(s) 734
MaeII ACGT 4 cut(s) 17, 232, 514, 551
MaeIII GTNAC 2 cut(s) 13, 228
MalI GATC 4 cut(s) 43, 103, 267, 495
MboI GATC 4 cut(s) 41, 101, 265, 493
MboII GAAGA 6 cut(s) 51, 150, 365, 404, 415, 650
MluCI AATT 2 cut(s) 27, 702
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 3 cut(s) 30, 170, 788
MslI CAYNNNNRTG 2 cut(s) 742, 777
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 2 cut(s) 196, 417
MvnI CGCG 3 cut(s) 76, 96, 167
MwoI GCNNNNNNNGC 3 cut(s) 173, 536, 545
NdeI CATATG 2 cut(s) 81, 641
NdeII GATC 4 cut(s) 41, 101, 265, 493
NlaIII CATG 4 cut(s) 24, 595, 776, 782
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 228
PceI AGGCCT 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 287, 521
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 233
PshBI ATTAAT 1 cut(s) 30
PspCI CACGTG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 140
RseI CAYNNNNRTG 2 cut(s) 742, 777
SaqAI TTAA 3 cut(s) 30, 170, 788
Sau3AI GATC 4 cut(s) 41, 101, 265, 493
Sau96I GGNCC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 734
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 2 cut(s) 742, 777
SmlI CTYRAG 4 cut(s) 212, 261, 381, 712
SmoI CTYRAG 4 cut(s) 212, 261, 381, 712
Sse9I AATT 2 cut(s) 27, 702
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 3 cut(s) 121, 346, 528
StuI AGGCCT 1 cut(s) 51
TaiI ACGT 4 cut(s) 20, 235, 517, 554
TaqI TCGA 2 cut(s) 372, 688
TaqII GACCGA 1 cut(s) 128
TasI AATT 2 cut(s) 27, 702
TfiI GAWTC 2 cut(s) 287, 521
Tru1I TTAA 3 cut(s) 30, 170, 788
Tru9I TTAA 3 cut(s) 30, 170, 788
TseFI GTSAC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 5 cut(s) 98, 140, 190, 513, 613
TspGWI ACGGA 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 140
VspI ATTAAT 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.