Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

22909134 .. 22909629

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGACTTGGTTGAAACTTGTGCTTTGTAGGACTGAGATAGAATGGTATAGCAGAACACGTATGACACCAAAGCTCAATGAGAAGAGGCTTTATGTGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCCGAGTCAACCATTCGAGAGGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

68

Amino Acids

8.16

Weight (kDa)

9.89

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	13, 124
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	101
BsiHKCI	CYCGRG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	101
CviAII	CATG	2 cut(s)	179, 189
CviJI	RGCY	2 cut(s)	73, 88
CviKI_1	RGCY	2 cut(s)	73, 88
DdeI	CTNAG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	149
FaeI	CATG	2 cut(s)	182, 192
FaiI	YATR	5 cut(s)	48, 62, 93, 180, 190
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	178, 188
Hin1II	CATG	2 cut(s)	182, 192
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	137, 156
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	137, 156
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	182, 192
MaeII	ACGT	1 cut(s)	58
MboII	GAAGA	2 cut(s)	94, 112
MfeI	CAATTG	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	2 cut(s)	78, 160
MunI	CAATTG	1 cut(s)	106
NlaIII	CATG	2 cut(s)	182, 192
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	59
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	3 cut(s)	61, 75, 171
SgeI	CNNG	9 cut(s)	18, 29, 69, 155, 161, 163, 176, 191, 201
Sse9I	AATT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	163
TasI	AATT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.