Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000435.1

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Forward (+)

14550 .. 16273

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000435.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggggacgacgacagacagagggaagaaacctctccaaagctcagaagtctcccaagctcgtgaagaaccatcaagctgccaaatagccggtctcttcacctcaccggcttcagacaaacaagagaaatcacttgcaagctcagaagtcgtcaaactcgcggagaatcaacaagcactaagcacacgtgccgattcatcctccatcaaagctaaagaacactcaccacgtgacatcgctcgtggttcaaatctgatcaagagcaagccgctatatcccttgatcaaccgccttctgcaagtcgtcaacaaagtaaatcttctacaagttcttcatcaagctcgtgagaatcaacaagcaccaaacacacgtgtcggttcgtcccctaccaaagcggaagaacgctcaccacgtgacacaactcgtggcctaaatccgatcaagatcaagcttctacagcccttggtcaatcgtcttcctcaaatcgtcaacatagcaggaagttcagattgcaaccgtttgattcaagatcaagtgctcgccaccctgggatcaaatcaacctcttgatctgctactaatcttccctagtggagctggtgacctggagatcgatggtatccttcgcggtgcaggagctttgagagcacgagacatagtccacactaatcacaaccataccgtattaagtgtccccgcagcatcagaaagccatgatggtttgctcatggacccaaaaaatttggtggagtacttcaagttcaaaaggggcagagagccagagattctcctgatgacgaatgaaccgctctgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

271

Amino Acids

29.59

Weight (kDa)

9.15

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	808
AccII	CGCG	2 cut(s)	161, 627
AciI	CCGC	7 cut(s)	161, 269, 289, 395, 627, 696, 806
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	739
AcuI	CTGAAG	1 cut(s)	96
AcvI	CACGTG	4 cut(s)	188, 230, 371, 413
AdeI	CACNNNGTG	2 cut(s)	230, 413
AfaI	GTAC	1 cut(s)	752
AflIII	ACRYGT	3 cut(s)	185, 368, 370
AgsI	TTSAA	4 cut(s)	249, 527, 757, 763
AjnI	CCWGG	2 cut(s)	546, 603
AluBI	AGCT	9 cut(s)	42, 59, 78, 141, 212, 341, 451, 596, 638
AluI	AGCT	9 cut(s)	42, 59, 78, 141, 212, 341, 451, 596, 638
Alw21I	GWGCWC	2 cut(s)	540, 649
Alw26I	GTCTC	3 cut(s)	55, 98, 645
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	2 cut(s)	78, 698
ApoI	RAATTY	1 cut(s)	739
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspS9I	GGNCC	1 cut(s)	730
AsuHPI	GGTGA	5 cut(s)	91, 96, 216, 399, 611
AvaII	GGWCC	1 cut(s)	730
BauI	CACGAG	5 cut(s)	60, 240, 342, 423, 648
BbrPI	CACGTG	4 cut(s)	188, 230, 371, 413
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	2 cut(s)	540, 649
BbvI	GCAGC	2 cut(s)	65, 710
BccI	CCATC	4 cut(s)	79, 212, 608, 710
BciT130I	CCWGG	2 cut(s)	548, 605
BciVI	GTATCC	1 cut(s)	629
BclI	TGATCA	2 cut(s)	255, 282
BcoDI	GTCTC	3 cut(s)	55, 98, 645
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	629
BisI	GCNGC	3 cut(s)	79, 269, 699
BlsI	GCNGC	3 cut(s)	80, 270, 700
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	2 cut(s)	548, 605
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	2 cut(s)	548, 605
BmsI	GCATC	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	467
BpmI	CTGGAG	1 cut(s)	626
Bsa29I	ATCGAT	1 cut(s)	612
BsaAI	YACGTR	4 cut(s)	188, 230, 371, 413
BsaBI	GATNNNNATC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	462, 546, 547
Bse118I	RCCGGY	2 cut(s)	89, 106
Bse8I	GATNNNNATC	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	548, 605
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	3 cut(s)	462, 546, 547
BseGI	GGATG	1 cut(s)	197
BseJI	GATNNNNATC	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	57, 156
BseXI	GCAGC	2 cut(s)	65, 710
BsgI	GTGCAG	1 cut(s)	651
Bsh1236I	CGCG	2 cut(s)	161, 627
BshFI	GGCC	1 cut(s)	429
BshVI	ATCGAT	1 cut(s)	612
BsiHKAI	GWGCWC	2 cut(s)	540, 649
BsiSI	CCGG	2 cut(s)	90, 107
BslFI	GGGAC	3 cut(s)	19, 367, 677
BsmAI	GTCTC	3 cut(s)	55, 98, 645
BsmFI	GGGAC	3 cut(s)	19, 367, 677
BsnI	GGCC	1 cut(s)	429
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	540, 649
Bsp143I	GATC	8 cut(s)	255, 282, 438, 444, 529, 551, 568, 609
BspACI	CCGC	7 cut(s)	161, 269, 289, 395, 627, 696, 806
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	2 cut(s)	56, 155
BspDI	ATCGAT	1 cut(s)	612
BspFNI	CGCG	2 cut(s)	161, 627
BspLI	GGNNCC	1 cut(s)	732
BspPI	GGATC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	808
BsrFI	RCCGGY	2 cut(s)	89, 106
BssAI	RCCGGY	2 cut(s)	89, 106
BssECI	CCNNGG	3 cut(s)	462, 546, 547
BssMI	GATC	8 cut(s)	255, 282, 438, 444, 529, 551, 568, 609
BssSI	CACGAG	5 cut(s)	60, 240, 342, 423, 648
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	5 cut(s)	60, 240, 342, 423, 648
Bst2UI	CCWGG	2 cut(s)	548, 605
Bst4CI	ACNGT	2 cut(s)	518, 682
Bst6I	CTCTTC	1 cut(s)	101
BstBAI	YACGTR	4 cut(s)	188, 230, 371, 413
BstC8I	GCNNGC	3 cut(s)	139, 266, 540
BstDEI	CTNAG	3 cut(s)	43, 142, 179
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	2 cut(s)	161, 627
BstKTI	GATC	8 cut(s)	258, 285, 441, 447, 532, 554, 571, 612
BstMAI	GTCTC	3 cut(s)	55, 98, 645
BstMBI	GATC	8 cut(s)	255, 282, 438, 444, 529, 551, 568, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 644
BstNI	CCWGG	2 cut(s)	548, 605
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	546, 603
BstSFI	CTRYAG	1 cut(s)	455
BstUI	CGCG	2 cut(s)	161, 627
BstV1I	GCAGC	2 cut(s)	65, 710
BstV2I	GAAGAC	1 cut(s)	467
Bsu15I	ATCGAT	1 cut(s)	612
BsuI	GTATCC	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	429
BsuTUI	ATCGAT	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	139, 266, 540
Cfr10I	RCCGGY	2 cut(s)	89, 106
Cfr13I	GGNCC	1 cut(s)	730
ClaI	ATCGAT	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	751
CviAII	CATG	2 cut(s)	713, 727
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	3 cut(s)	43, 142, 179
DpnI	GATC	8 cut(s)	257, 284, 440, 446, 531, 553, 570, 611
DpnII	GATC	8 cut(s)	255, 282, 438, 444, 529, 551, 568, 609
DraIII	CACNNNGTG	2 cut(s)	230, 413
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	730
Eco57I	CTGAAG	1 cut(s)	96
Eco72I	CACGTG	4 cut(s)	188, 230, 371, 413
Eco91I	GGTNACC	1 cut(s)	599
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	546, 603
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	2 cut(s)	716, 730
FaiI	YATR	6 cut(s)	274, 494, 656, 678, 714, 728
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	3 cut(s)	19, 367, 677
FatI	CATG	2 cut(s)	712, 726
FauI	CCCGC	1 cut(s)	703
FbaI	TGATCA	2 cut(s)	255, 282
Fnu4HI	GCNGC	3 cut(s)	79, 269, 699
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	79, 269, 699
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	3 cut(s)	79, 269, 699
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	2 cut(s)	90, 107
Hin1II	CATG	2 cut(s)	716, 730
HincII	GTYRAC	2 cut(s)	307, 490
HindII	GTYRAC	2 cut(s)	307, 490
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	5 cut(s)	166, 194, 349, 523, 784
HpaII	CCGG	2 cut(s)	90, 107
HphI	GGTGA	5 cut(s)	91, 96, 216, 399, 611
Hpy166II	GTNNAC	3 cut(s)	307, 490, 661
Hpy188I	TCNGA	7 cut(s)	46, 115, 145, 255, 438, 508, 706
Hpy188III	TCNNGA	7 cut(s)	62, 259, 344, 442, 527, 566, 790
Hpy8I	GTNNAC	3 cut(s)	307, 490, 661
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	302, 632
HpyCH4III	ACNGT	2 cut(s)	518, 682
HpyCH4IV	ACGT	4 cut(s)	187, 229, 370, 412
HpyCH4V	TGCA	4 cut(s)	137, 298, 513, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 644
HpyF3I	CTNAG	3 cut(s)	43, 142, 179
HpySE526I	ACGT	4 cut(s)	187, 229, 370, 412
Hsp92II	CATG	2 cut(s)	716, 730
Ksp22I	TGATCA	2 cut(s)	255, 282
Kzo9I	GATC	8 cut(s)	255, 282, 438, 444, 529, 551, 568, 609
LmnI	GCTCC	2 cut(s)	593, 635
Lsp1109I	GCAGC	2 cut(s)	65, 710
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	4 cut(s)	187, 229, 370, 412
MaeIII	GTNAC	3 cut(s)	230, 413, 599
MalI	GATC	8 cut(s)	257, 284, 440, 446, 531, 553, 570, 611
MbiI	CCGCTC	1 cut(s)	808
MboI	GATC	8 cut(s)	255, 282, 438, 444, 529, 551, 568, 609
MboII	GAAGA	8 cut(s)	37, 77, 88, 311, 323, 410, 467, 574
MhlI	GDGCHC	2 cut(s)	540, 649
MluCI	AATT	1 cut(s)	739
MnlI	CCTC	6 cut(s)	14, 42, 112, 211, 489, 573
MseI	TTAA	1 cut(s)	686
MspI	CCGG	2 cut(s)	90, 107
MspR9I	CCNGG	2 cut(s)	548, 605
MvaI	CCWGG	2 cut(s)	548, 605
MvnI	CGCG	2 cut(s)	161, 627
MwoI	GCNNNNNNNGC	2 cut(s)	457, 644
NdeII	GATC	8 cut(s)	255, 282, 438, 444, 529, 551, 568, 609
NlaIII	CATG	2 cut(s)	716, 730
NlaIV	GGNNCC	1 cut(s)	732
NmuCI	GTSAC	3 cut(s)	230, 413, 599
PasI	CCCWGGG	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PfeI	GAWTC	5 cut(s)	166, 194, 349, 523, 784
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	3 cut(s)	80, 270, 700
PmaCI	CACGTG	4 cut(s)	188, 230, 371, 413
PmlI	CACGTG	4 cut(s)	188, 230, 371, 413
Ppu21I	YACGTR	4 cut(s)	188, 230, 371, 413
Psp6I	CCWGG	2 cut(s)	546, 603
PspCI	CACGTG	4 cut(s)	188, 230, 371, 413
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	2 cut(s)	546, 603
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	730
PsrI	GAACNNNNNNTAC	2 cut(s)	743, 775
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
SaqAI	TTAA	1 cut(s)	686
SatI	GCNGC	3 cut(s)	79, 269, 699
Sau3AI	GATC	8 cut(s)	255, 282, 438, 444, 529, 551, 568, 609
Sau96I	GGNCC	1 cut(s)	730
ScaI	AGTACT	1 cut(s)	752
ScrFI	CCNGG	2 cut(s)	548, 605
SduI	GDGCHC	2 cut(s)	540, 649
SfaNI	GCATC	1 cut(s)	710
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	730
Sse9I	AATT	1 cut(s)	739
SsiI	CCGC	7 cut(s)	161, 269, 289, 395, 627, 696, 806
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	546, 603
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	518, 682
TaiI	ACGT	4 cut(s)	190, 232, 373, 415
TaqI	TCGA	1 cut(s)	612
TasI	AATT	1 cut(s)	739
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	5 cut(s)	166, 194, 349, 523, 784
Tru1I	TTAA	1 cut(s)	686
Tru9I	TTAA	1 cut(s)	686
TseFI	GTSAC	3 cut(s)	230, 413, 599
TseI	GCWGC	2 cut(s)	78, 698
Tsp45I	GTSAC	3 cut(s)	230, 413, 599
TspDTI	ATGAA	3 cut(s)	186, 323, 816
Tth111I	GACNNNGTC	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	1 cut(s)	739
XspI	CTAG	1 cut(s)	588
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.