Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005852.1

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

28164 .. 33814

Gene Structure 5651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005852.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgagcatcggcaccatcgagaccttcgaaggtgtcccctttggcggcaacctgaaccagaaaggccccgcgaaacgaatatatgaccccatgccaaagcccgcgtttagaaaccgtattgagaaactcagattgttgcaggcgactcagatagaatggtatagcagaacacgtttgacaccaaatctcaatgagaagaggctttatgagggcactaacaattggggaagtttattcaactttttcagtccaccccaagtccccaaagttatagatggaaaagcggccaacgaaatccaaaaccttatggaacaagattatgaaattgggtcaaccattcgagaggtcattccccatgctgtgtcatggtttgcaaaaagtattgtaaacggtgatgctggacctgaaggagattctaatgcagctgccacaaagcaggagcctgcaacctgtgttatgaatggagtgcctggattctggctccatgctttatcaaaaaataacttgctaacacgagagattattgggcgtggcactgaagctcttgcatatcttagagacatcaaggggtccaagatagatggtgacaataagggatttaaactcgacttctattttgaacctaataacttttttatgaacccggttttgtccaagacatatcatatggttgatgaagggggacccattctagcaaaagcaatagggacggaaattgaatggtatcgaggtcgttgcttgacaaagaacaccattgagaagaatagtatgaaaggatcttttcccaaaggaactgaaaatcgtaaaagtttcttcaactttttcagtacatatcaagtccttgaagatattgatgctgttagaaaccaaatggaaatagattatgaaattgggtcaacaattagagacatggtcatcccctatgctgtttcttggtttacgggggaggcttggagaagtacggatgaatacagtgacactgaggatgatgatgacgaagatgatgatgaggatgaggatgatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

342

Amino Acids

38.83

Weight (kDa)

4.74

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccII	CGCG	2 cut(s)	71, 104
AciI	CCGC	4 cut(s)	45, 69, 102, 284
AclWI	GGATC	1 cut(s)	784
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	426, 558
AfaI	GTAC	2 cut(s)	829, 961
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	238, 620, 719, 817, 845
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	2 cut(s)	425, 542
AluI	AGCT	2 cut(s)	425, 542
Alw26I	GTCTC	3 cut(s)	14, 552, 900
AlwI	GGATC	1 cut(s)	784
AoxI	GGCC	2 cut(s)	64, 285
ApeKI	GCWGC	2 cut(s)	422, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	599, 631
AspS9I	GGNCC	4 cut(s)	65, 401, 570, 683
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	2 cut(s)	404, 596
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	3 cut(s)	401, 570, 683
BaeGI	GKGCMC	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	11
BauI	CACGAG	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	412, 434
BccI	CCATC	3 cut(s)	23, 269, 575
BcgI	CGANNNNNNTGC	2 cut(s)	717, 751
BciT130I	CCWGG	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	3 cut(s)	14, 552, 900
BfaI	CTAG	1 cut(s)	692
BisI	GCNGC	4 cut(s)	46, 285, 423, 426
BlsI	GCNGC	4 cut(s)	47, 286, 424, 427
Bme1390I	CCNGG	2 cut(s)	471, 644
Bme18I	GGWCC	3 cut(s)	401, 570, 683
BmgT120I	GGNCC	4 cut(s)	65, 401, 570, 683
BmiI	GGNNCC	7 cut(s)	13, 67, 441, 482, 571, 684, 685
BmrFI	CCNGG	2 cut(s)	471, 644
BmsI	GCATC	3 cut(s)	15, 385, 844
Bpu14I	TTCGAA	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	471
BseGI	GGATG	5 cut(s)	915, 970, 991, 1018, 1024
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	3 cut(s)	142, 161, 972
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	412, 434
Bsh1236I	CGCG	2 cut(s)	71, 104
BshFI	GGCC	2 cut(s)	66, 287
BshNI	GGYRCC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	4 cut(s)	20, 245, 696, 721
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	14, 552, 900
BsmFI	GGGAC	4 cut(s)	20, 245, 696, 721
BsnI	GGCC	2 cut(s)	66, 287
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	776
BspACI	CCGC	4 cut(s)	45, 69, 102, 284
BspANI	GGCC	2 cut(s)	66, 287
BspCNI	CTCAG	3 cut(s)	141, 160, 973
BspFNI	CGCG	2 cut(s)	71, 104
BspLI	GGNNCC	7 cut(s)	13, 67, 441, 482, 571, 684, 685
BspPI	GGATC	1 cut(s)	784
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	14
BssMI	GATC	1 cut(s)	776
BssSI	CACGAG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	3 cut(s)	116, 392, 974
Bst6I	CTCTTC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	102, 141, 444
BstDEI	CTNAG	4 cut(s)	128, 147, 554, 981
BstF5I	GGATG	5 cut(s)	915, 970, 991, 1018, 1024
BstFNI	CGCG	2 cut(s)	71, 104
BstKTI	GATC	1 cut(s)	779
BstMAI	GTCTC	3 cut(s)	14, 552, 900
BstMBI	GATC	1 cut(s)	776
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	2 cut(s)	469, 642
BstSLI	GKGCMC	1 cut(s)	215
BstUI	CGCG	2 cut(s)	71, 104
BstV1I	GCAGC	2 cut(s)	412, 434
BstX2I	RGATCY	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	776
BsuRI	GGCC	2 cut(s)	66, 287
BtsCI	GGATG	5 cut(s)	915, 970, 991, 1018, 1024
BtsIMutI	CAGTG	3 cut(s)	534, 978, 979
Cac8I	GCNNGC	3 cut(s)	102, 141, 444
Cfr13I	GGNCC	4 cut(s)	65, 401, 570, 683
Csp6I	GTAC	2 cut(s)	828, 960
CviAII	CATG	5 cut(s)	91, 356, 366, 485, 910
CviJI	RGCY	9 cut(s)	66, 100, 202, 287, 425, 442, 481, 542, 950
CviKI_1	RGCY	9 cut(s)	66, 100, 202, 287, 425, 442, 481, 542, 950
CviQI	GTAC	2 cut(s)	828, 960
DdeI	CTNAG	4 cut(s)	128, 147, 554, 981
DpnI	GATC	1 cut(s)	778
DpnII	GATC	1 cut(s)	776
DraI	TTTAAA	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	3 cut(s)	401, 570, 683
Eco57I	CTGAAG	2 cut(s)	426, 558
EcoO109I	RGGNCCY	2 cut(s)	65, 683
EcoRII	CCWGG	1 cut(s)	469
FaeI	CATG	5 cut(s)	94, 359, 369, 488, 913
FaqI	GGGAC	4 cut(s)	20, 245, 696, 721
FatI	CATG	5 cut(s)	90, 355, 365, 484, 909
FauI	CCCGC	2 cut(s)	76, 109
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	4 cut(s)	46, 285, 423, 426
FokI	GGATG	4 cut(s)	902, 977, 998, 1025
Fsp4HI	GCNGC	4 cut(s)	46, 285, 423, 426
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	4 cut(s)	46, 285, 423, 426
HaeIII	GGCC	2 cut(s)	66, 287
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	5 cut(s)	94, 359, 369, 488, 913
HincII	GTYRAC	2 cut(s)	333, 897
HindII	GTYRAC	2 cut(s)	333, 897
HinfI	GANTC	3 cut(s)	145, 413, 474
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	2 cut(s)	404, 596
Hpy166II	GTNNAC	5 cut(s)	251, 333, 388, 897, 939
Hpy188I	TCNGA	2 cut(s)	131, 150
Hpy188III	TCNNGA	2 cut(s)	19, 341
Hpy8I	GTNNAC	5 cut(s)	251, 333, 388, 897, 939
HpyAV	CCTTC	4 cut(s)	23, 34, 401, 671
HpyCH4III	ACNGT	3 cut(s)	116, 392, 974
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	139, 374, 422, 446, 548
HpyF3I	CTNAG	4 cut(s)	128, 147, 554, 981
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	5 cut(s)	94, 359, 369, 488, 913
KflI	GGGWCCC	1 cut(s)	683
Kzo9I	GATC	1 cut(s)	776
LmnI	GCTCC	2 cut(s)	439, 486
Lsp1109I	GCAGC	2 cut(s)	412, 434
LweI	GCATC	3 cut(s)	15, 385, 844
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	584, 974
MalI	GATC	1 cut(s)	778
MboI	GATC	1 cut(s)	776
MboII	GAAGA	5 cut(s)	208, 772, 805, 857, 1010
MfeI	CAATTG	1 cut(s)	220
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	5 cut(s)	220, 324, 714, 888, 900
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	8 cut(s)	192, 202, 337, 722, 940, 976, 1003, 1009
MseI	TTAA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	471, 644
MunI	CAATTG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	2 cut(s)	71, 104
NciI	CCSGG	1 cut(s)	644
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	1 cut(s)	776
NlaIII	CATG	5 cut(s)	94, 359, 369, 488, 913
NlaIV	GGNNCC	7 cut(s)	13, 67, 441, 482, 571, 684, 685
NmuCI	GTSAC	2 cut(s)	584, 974
NspV	TTCGAA	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 24
PfeI	GAWTC	2 cut(s)	413, 474
PflFI	GACNNNGTC	1 cut(s)	911
PkrI	GCNGC	4 cut(s)	47, 286, 424, 427
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	7 cut(s)	13, 67, 441, 482, 571, 684, 685
PspPI	GGNCC	4 cut(s)	65, 401, 570, 683
PspPPI	RGGWCCY	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	776
PsyI	GACNNNGTC	1 cut(s)	911
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	829, 961
RsaNI	GTAC	2 cut(s)	828, 960
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	4 cut(s)	46, 285, 423, 426
Sau3AI	GATC	1 cut(s)	776
Sau96I	GGNCC	4 cut(s)	65, 401, 570, 683
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	471, 644
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	3 cut(s)	15, 385, 844
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	3 cut(s)	401, 570, 683
Sse9I	AATT	5 cut(s)	220, 324, 714, 888, 900
SsiI	CCGC	4 cut(s)	45, 69, 102, 284
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	2 cut(s)	469, 642
TaaI	ACNGT	3 cut(s)	116, 392, 974
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	5 cut(s)	18, 27, 340, 606, 727
TasI	AATT	5 cut(s)	220, 324, 714, 888, 900
TatI	WGTACW	1 cut(s)	827
TauI	GCSGC	2 cut(s)	48, 287
TfiI	GAWTC	2 cut(s)	413, 474
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	3 cut(s)	541, 979, 985
TseFI	GTSAC	2 cut(s)	584, 974
TseI	GCWGC	2 cut(s)	422, 425
Tsp45I	GTSAC	2 cut(s)	584, 974
TspDTI	ATGAA	7 cut(s)	336, 473, 653, 690, 785, 900, 981
TspGWI	ACGGA	2 cut(s)	725, 977
TspRI	CASTG	3 cut(s)	541, 979, 985
Tth111I	GACNNNGTC	1 cut(s)	911
VpaK11BI	GGWCC	3 cut(s)	401, 570, 683
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.