Rroxscaffold_7G00190420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001850
Physical Location & Seq
Reverse (-)
30544268 .. 30546752
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190420.1

Sequence Viewer

Length: 558 bp
ATGAGCATCGGCGCCATCGAGGCCTTCGAAGGTGTGCCCTTTGGCGGCAACATGAACCAGAAAGGCCCCGGGAAACGAATATATGACCCCATGCCAAAGCCCTTCGAGCATGACACACTGGAGAGACAGTATTTCAAGGACAGGGCAGCACTTGAAGCCGAGTTTCAACAATCTTGTCTACCTCTGCACAATCAGGGCAACAAGCATGGCAAATTATCATCATCACAAGCACCATGTGGAGCTGCAGCTGTAAATGAAGTGCCAAGTACACCATCAACGACGACAACGGACAGAGACAAACGCAAGCGGACGGAAGAAACCTATCCAAAGCTCGAAGTCTCCCAAGCTCGTGAAGAACCATCAAGCTGCCAAATAGCCGGTCTCTTCACCTCACCAACTTCGGACAAACAAGGGAAATCACCCGCAAGCTCGAAGTTGTCAAACTCGCGAAAAATCAACAAGCACCAAGAAAACGTGCCAGTTCATCCGCCATCAAAGCCATACTCGCCACGTGACACTTCTCGTGGTTCAAGTCCGATCAAGATCAAGCCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.27

Weight (kDa)

9.36

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 178
AccII CGCG 1 cut(s) 448
AciI CCGC 4 cut(s) 45, 307, 423, 488
AcvI CACGTG 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 136, 155, 167, 531
AluBI AGCT 6 cut(s) 242, 248, 331, 347, 366, 429
AluI AGCT 6 cut(s) 242, 248, 331, 347, 366, 429
Alw26I GTCTC 4 cut(s) 118, 288, 343, 386
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 2 cut(s) 21, 64
ApeKI GCWGC 4 cut(s) 146, 242, 245, 366
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 65
AsuC2I CCSGG 2 cut(s) 69, 70
AsuHPI GGTGA 3 cut(s) 379, 384, 411
AsuII TTCGAA 1 cut(s) 27
AvaI CYCGRG 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 11
BauI CACGAG 2 cut(s) 348, 522
BbrPI CACGTG 1 cut(s) 512
BbvI GCAGC 4 cut(s) 158, 229, 257, 353
BccI CCATC 4 cut(s) 23, 280, 367, 499
BcnI CCSGG 2 cut(s) 69, 70
BcoDI GTCTC 4 cut(s) 118, 288, 343, 386
BfmI CTRYAG 2 cut(s) 243, 554
BfoI RGCGCY 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 5 cut(s) 46, 147, 243, 246, 367
BlsI GCNGC 5 cut(s) 47, 148, 244, 247, 368
Bme1390I CCNGG 2 cut(s) 69, 70
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 13, 67
BmrFI CCNGG 2 cut(s) 69, 70
BmsI GCATC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 69, 70
BsaAI YACGTR 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 67, 68
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 123, 479
Bse8I GATNNNNATC 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 67, 68
BseGI GGATG 1 cut(s) 484
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 123, 479
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 4 cut(s) 158, 229, 257, 353
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 448
BshFI GGCC 2 cut(s) 23, 66
BshNI GGYRCC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 2 cut(s) 69, 378
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 4 cut(s) 118, 288, 343, 386
BsnI GGCC 2 cut(s) 23, 66
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 537, 543
Bsp68I TCGCGA 1 cut(s) 448
BspACI CCGC 4 cut(s) 45, 307, 423, 488
BspANI GGCC 2 cut(s) 23, 66
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 13, 67
BspMAI CTGCAG 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 386
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 2 cut(s) 123, 479
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 67, 68
BssMI GATC 2 cut(s) 537, 543
BssNI GRCGYC 1 cut(s) 12
BssSI CACGAG 2 cut(s) 348, 522
Bst2BI CACGAG 2 cut(s) 348, 522
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 12
BstBAI YACGTR 1 cut(s) 512
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 305, 427
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 448
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 2 cut(s) 540, 546
BstMAI GTCTC 4 cut(s) 118, 288, 343, 386
BstMBI GATC 2 cut(s) 537, 543
BstMWI GCNNNNNNNGC 5 cut(s) 20, 106, 155, 496, 505
BstSCI CCNGG 2 cut(s) 67, 68
BstSFI CTRYAG 2 cut(s) 243, 554
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 4 cut(s) 158, 229, 257, 353
BsuRI GGCC 2 cut(s) 23, 66
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 116
BtuMI TCGCGA 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 305, 427
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 65
Cfr9I CCCGGG 1 cut(s) 68
Csp6I GTAC 1 cut(s) 267
CviAII CATG 5 cut(s) 52, 91, 110, 206, 234
CviQI GTAC 1 cut(s) 267
DinI GGCGCC 1 cut(s) 13
DpnI GATC 2 cut(s) 539, 545
DpnII GATC 2 cut(s) 537, 543
DraIII CACNNNGTG 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
EciI GGCGGA 1 cut(s) 477
Eco147I AGGCCT 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 386
Eco72I CACGTG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
FaeI CATG 5 cut(s) 55, 94, 113, 209, 237
FaiI YATR 9 cut(s) 53, 82, 84, 92, 111, 207, 235, 502, 556
FatI CATG 5 cut(s) 51, 90, 109, 205, 233
FauI CCCGC 1 cut(s) 430
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 5 cut(s) 46, 147, 243, 246, 367
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 5 cut(s) 46, 147, 243, 246, 367
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 46, 147, 243, 246, 367
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 23, 66
HapII CCGG 2 cut(s) 69, 378
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 5 cut(s) 55, 94, 113, 209, 237
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HpaII CCGG 2 cut(s) 69, 378
HphI GGTGA 3 cut(s) 379, 384, 411
Hpy166II GTNNAC 2 cut(s) 179, 269
Hpy188I TCNGA 2 cut(s) 403, 537
Hpy188III TCNNGA 3 cut(s) 350, 447, 541
Hpy8I GTNNAC 2 cut(s) 179, 269
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 23, 34, 112
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 2 cut(s) 474, 511
HpyCH4V TGCA 2 cut(s) 187, 245
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 106, 155, 496, 505
HpySE526I ACGT 2 cut(s) 474, 511
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 5 cut(s) 55, 94, 113, 209, 237
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
Kzo9I GATC 2 cut(s) 537, 543
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 7 cut(s) 71, 82, 104, 127, 179, 391, 492
Lsp1109I GCAGC 4 cut(s) 158, 229, 257, 353
LweI GCATC 1 cut(s) 15
MaeII ACGT 2 cut(s) 474, 511
MaeIII GTNAC 1 cut(s) 512
MalI GATC 2 cut(s) 539, 545
MboI GATC 2 cut(s) 537, 543
MboII GAAGA 3 cut(s) 326, 365, 376
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 212
Mly113I GGCGCC 1 cut(s) 12
MnlI CCTC 3 cut(s) 13, 192, 400
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 69, 378
MspR9I CCNGG 2 cut(s) 69, 70
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 5 cut(s) 20, 106, 155, 496, 505
NarI GGCGCC 1 cut(s) 12
NciI CCSGG 2 cut(s) 69, 70
NdeII GATC 2 cut(s) 537, 543
NlaIII CATG 5 cut(s) 55, 94, 113, 209, 237
NlaIV GGNNCC 2 cut(s) 13, 67
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 512
NruI TCGCGA 1 cut(s) 448
NspV TTCGAA 1 cut(s) 27
PceI AGGCCT 1 cut(s) 23
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 24
PkrI GCNGC 5 cut(s) 47, 148, 244, 247, 368
PluTI GGCGCC 1 cut(s) 15
PmaCI CACGTG 1 cut(s) 512
PmlI CACGTG 1 cut(s) 512
Ppu21I YACGTR 1 cut(s) 512
PspCI CACGTG 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 13, 67
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 248
RruI TCGCGA 1 cut(s) 448
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SatI GCNGC 5 cut(s) 46, 147, 243, 246, 367
Sau3AI GATC 2 cut(s) 537, 543
Sau96I GGNCC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 69, 70
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 2 cut(s) 243, 554
SfoI GGCGCC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 27
SmaI CCCGGG 1 cut(s) 70
Sse9I AATT 1 cut(s) 212
SseBI AGGCCT 1 cut(s) 23
SsiI CCGC 4 cut(s) 45, 307, 423, 488
SspDI GGCGCC 1 cut(s) 11
StuI AGGCCT 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 67, 68
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 2 cut(s) 477, 514
TaqI TCGA 5 cut(s) 18, 27, 105, 333, 431
TasI AATT 1 cut(s) 212
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 48
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 4 cut(s) 146, 242, 245, 366
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 3 cut(s) 68, 270, 473
TspGWI ACGGA 2 cut(s) 302, 326
TspMI CCCGGG 1 cut(s) 68
TspRI CASTG 1 cut(s) 123
XmaI CCCGGG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.