Rh2DG527300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001850
Physical Location & Seq
Reverse (-)
75232294 .. 75234843
2550 bp
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UTR
Exon/CDS
Intron
Rh2DG527300.1

Sequence Viewer

Length: 480 bp
ATGAGCATCGGCACCATCGAGACCTTCAAAGGTGTCCCCTTTGGCGGCAACCTGAACCAGAAAGGCCCCGCGAAACGAATATATGACCCCATGCCAAATTCGAGCATGACACAATGTAGAGACAGTATTTCAAGGACAGGGCAGCACTTGAAGCCGAGTTTCAACAATCTTGTCTACCTCTGCACAATCAGGAAAGCAATAGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAATCTCAATGAGAAGAGGCTTTATGAGGGCACTAACAATTGTCCACCCCAAGTCCCCAAAGTTATAGATGGAAAAGCGGTCAACCATTCGAGAGGTCATTCCCCATGCTGTGTCATGGTTTGCAAAAAGGCCATGCCAATACTGAAAGGCACTTTGCATTGTGTCTTCATCAAGATTGGGTATCAAGGTGGGCTTTGCTTAAAAATTAGGATCAAGAAGGTTGCTGTGCGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.75

Weight (kDa)

9.94

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 45, 69, 320
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 4 cut(s) 28, 132, 151, 163
Alw26I GTCTC 2 cut(s) 14, 114
AlwI GGATC 1 cut(s) 461
AoxI GGCC 2 cut(s) 64, 372
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 23, 305
BcoDI GTCTC 2 cut(s) 14, 114
BisI GCNGC 2 cut(s) 46, 143
BlsI GCNGC 2 cut(s) 47, 144
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 13, 67
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 400
BsaI GGTCTC 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 66, 374
BshNI GGYRCC 1 cut(s) 11
BslFI GGGAC 3 cut(s) 20, 217, 281
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 14, 114
BsmFI GGGAC 3 cut(s) 20, 217, 281
BsnI GGCC 2 cut(s) 66, 374
Bso31I GGTCTC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 453
BspACI CCGC 3 cut(s) 45, 69, 320
BspANI GGCC 2 cut(s) 66, 374
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 13, 67
BspPI GGATC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 14
BssMI GATC 1 cut(s) 453
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 2 cut(s) 14, 114
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 275
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 400
BsuRI GGCC 2 cut(s) 66, 374
Cfr13I GGNCC 1 cut(s) 65
CviAII CATG 5 cut(s) 91, 106, 348, 358, 376
CviJI RGCY 5 cut(s) 66, 154, 262, 374, 436
CviKI_1 RGCY 5 cut(s) 66, 154, 262, 374, 436
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 65
FaeI CATG 5 cut(s) 94, 109, 351, 361, 379
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 3 cut(s) 20, 217, 281
FatI CATG 5 cut(s) 90, 105, 347, 357, 375
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 46, 143
Fsp4HI GCNGC 2 cut(s) 46, 143
GluI GCNGC 2 cut(s) 46, 143
HaeIII GGCC 2 cut(s) 66, 374
Hin1II CATG 5 cut(s) 94, 109, 351, 361, 379
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
Hpy166II GTNNAC 3 cut(s) 175, 287, 325
Hpy188III TCNNGA 5 cut(s) 19, 190, 333, 415, 457
Hpy8I GTNNAC 3 cut(s) 175, 287, 325
HpyAV CCTTC 2 cut(s) 34, 454
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 183, 366, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 5 cut(s) 94, 109, 351, 361, 379
Kzo9I GATC 1 cut(s) 453
LpnPI CCDG 4 cut(s) 65, 71, 123, 175
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 15
MaeII ACGT 1 cut(s) 232
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 2 cut(s) 268, 400
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 3 cut(s) 97, 280, 447
MnlI CCTC 4 cut(s) 188, 252, 262, 329
MseI TTAA 1 cut(s) 443
MunI CAATTG 1 cut(s) 280
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 1 cut(s) 453
NlaIII CATG 5 cut(s) 94, 109, 351, 361, 379
NlaIV GGNNCC 2 cut(s) 13, 67
NmeAIII GCCGAG 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PkrI GCNGC 2 cut(s) 47, 144
PspN4I GGNNCC 2 cut(s) 13, 67
PspPI GGNCC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 2 cut(s) 46, 143
Sau3AI GATC 1 cut(s) 453
Sau96I GGNCC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 275
SetI ASST 8 cut(s) 26, 34, 54, 180, 235, 340, 433, 465
SfaNI GCATC 1 cut(s) 15
Sse9I AATT 3 cut(s) 97, 280, 447
SsiI CCGC 3 cut(s) 45, 69, 320
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 235
TaqI TCGA 3 cut(s) 18, 101, 332
TasI AATT 3 cut(s) 97, 280, 447
TauI GCSGC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 400
XapI RAATTY 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.