Rroxscaffold_4G00283070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001850
Physical Location & Seq
Forward (+)
5104756 .. 5106628
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283070.1

Sequence Viewer

Length: 381 bp
ATGCCTCTCAAGGATTCTAAATGCCCCAAGTCCTCAAGGATTCTAAATACCTTTTCCTCCAACATTTATACCAACGAGGACAAACGACAAAGGAGGACGACGGACGAGAGGGACACAAAGCGGACGGAAGAAACCTCTCCAAAGCTCGAAGTCTCCCAAGCTCGTGAAGAACCATCAAGCTGCCAAATAGCCGGTCTCTTCACCTCACCGACTTCGGACAAGCGGGGAAATCACCTACAAGCTCGGAAGTCGTCAAACACGCGGAGGATCAACAAGCACCAAGCAAACATGCCGATTCATCCGCCATCAAAGCCATACTCGCCACGTGACACTTCTCGTGGTTCAAGTCCGATCTATAGATCAAGCCTCTATAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.37

Weight (kDa)

10.12

Isoelectric Point (pI)

87.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AciI CCGC 4 cut(s) 121, 223, 262, 302
AclWI GGATC 1 cut(s) 275
AcvI CACGTG 1 cut(s) 326
AgsI TTSAA 1 cut(s) 345
AluBI AGCT 4 cut(s) 145, 161, 180, 242
AluI AGCT 4 cut(s) 145, 161, 180, 242
Alw26I GTCTC 2 cut(s) 157, 200
AlwI GGATC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 180
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AsuHPI GGTGA 3 cut(s) 193, 198, 224
BauI CACGAG 2 cut(s) 162, 336
BbrPI CACGTG 1 cut(s) 326
BbvI GCAGC 1 cut(s) 167
BccI CCATC 2 cut(s) 181, 313
BcoDI GTCTC 2 cut(s) 157, 200
BfmI CTRYAG 2 cut(s) 355, 370
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 191
BseGI GGATG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 157, 200
BsmFI GGGAC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 267, 351, 359
BspACI CCGC 4 cut(s) 121, 223, 262, 302
BspFNI CGCG 1 cut(s) 262
BspPI GGATC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssMI GATC 3 cut(s) 267, 351, 359
BssSI CACGAG 2 cut(s) 162, 336
Bst2BI CACGAG 2 cut(s) 162, 336
Bst6I CTCTTC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 326
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 3 cut(s) 270, 354, 362
BstMAI GTCTC 2 cut(s) 157, 200
BstMBI GATC 3 cut(s) 267, 351, 359
BstMWI GCNNNNNNNGC 3 cut(s) 310, 319, 372
BstNSI RCATGY 1 cut(s) 292
BstSFI CTRYAG 2 cut(s) 355, 370
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 191
CviAII CATG 1 cut(s) 289
CviJI RGCY 8 cut(s) 145, 161, 180, 191, 242, 313, 366, 375
CviKI_1 RGCY 8 cut(s) 145, 161, 180, 191, 242, 313, 366, 375
DpnI GATC 3 cut(s) 269, 353, 361
DpnII GATC 3 cut(s) 267, 351, 359
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
EciI GGCGGA 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 200
Eco72I CACGTG 1 cut(s) 326
FaeI CATG 1 cut(s) 292
FaiI YATR 5 cut(s) 69, 290, 316, 357, 372
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
HapII CCGG 1 cut(s) 192
Hin1II CATG 1 cut(s) 292
HinfI GANTC 3 cut(s) 14, 40, 295
HpaII CCGG 1 cut(s) 192
HphI GGTGA 3 cut(s) 193, 198, 224
Hpy188I TCNGA 3 cut(s) 217, 246, 351
Hpy188III TCNNGA 1 cut(s) 164
Hpy99I CGWCG 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 3 cut(s) 310, 319, 372
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 3 cut(s) 267, 351, 359
LpnPI CCDG 1 cut(s) 205
Lsp1109I GCAGC 1 cut(s) 167
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 326
MalI GATC 3 cut(s) 269, 353, 361
MboI GATC 3 cut(s) 267, 351, 359
MboII GAAGA 3 cut(s) 140, 179, 190
MmeI TCCRAC 1 cut(s) 84
MspI CCGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 3 cut(s) 310, 319, 372
NdeII GATC 3 cut(s) 267, 351, 359
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 292
PfeI GAWTC 3 cut(s) 14, 40, 295
PkrI GCNGC 1 cut(s) 182
PmaCI CACGTG 1 cut(s) 326
PmlI CACGTG 1 cut(s) 326
Ppu21I YACGTR 1 cut(s) 326
PspCI CACGTG 1 cut(s) 326
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 3 cut(s) 267, 351, 359
SetI ASST 9 cut(s) 53, 137, 147, 163, 182, 206, 237, 244, 328
SfcI CTRYAG 2 cut(s) 355, 370
SmlI CTYRAG 2 cut(s) 8, 34
SmoI CTYRAG 2 cut(s) 8, 34
SsiI CCGC 4 cut(s) 121, 223, 262, 302
TaiI ACGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 147
TfiI GAWTC 3 cut(s) 14, 40, 295
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 2 cut(s) 116, 140
XceI RCATGY 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.