Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001850

Physical Location & Seq

Genomic Coordinates Reverse (-)

4601682 .. 4603938

Gene Structure 2257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCGGGTTCGAGTTCCGGCCGCTTCCGGATGCGCGCCGCCGTGCAAGGGTGGTTCCGGAGCTTCGAAGGTCGAGGCGAACCTGCGAGTGAAGTTTGGGATGGTTTCGTGGCCGGTAGCTCGACTCACCATGCTTGGAACCAAATCGGGGCCGTACGAACCCTACTCCTTCGCCGCCGTTCCGTGCCGAGCCGTGACCCAAGACTTCCGCAGTGGCTTCGCAAGGCCGAGGCGAATCTCCGGAGGTTGTTTGGCGTCAAATGATGACCTGTGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAAGCTCAATGAGAAGAGGCTTTATGTGGGCACTAACAATTGGGGAAGTTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCGAGTTATAGATGGAAAAGCGGTCAACCATTCGAGAGTGGACCAACTTCTGCCACCTCTCTCCTCGGTAGTTCACCCTATCGAATATCCAATCTTTCCTCCGGAGGAGTTCTCAACGACCAGGCAGTGCTAGTGAGCGCTTTCAATGAAAAGATGCAGATTTTAGATGGGCAGGACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

190

Amino Acids

20.74

Weight (kDa)

9.69

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057701 RchiOBHm_Chr6g0278381
rosa_multiflora	Rmu_sc0002080.1_g000035 Rmu_sc0002482.1_g000015 Rmu_sc0003837.1_g000009 Rmu_sc0005852.1_g000009 Rmu_sc0006325.1_g000033 Rmu_sc0009634.1_g000001 Rmu_ssc0000435.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033310 Rroxscaffold_2G00097210 Rroxscaffold_2G00100530 Rroxscaffold_3G00222980 Rroxscaffold_3G00223140 Rroxscaffold_4G00283070 Rroxscaffold_4G00302540 Rroxscaffold_5G00334950 Rroxscaffold_5G00336780 Rroxscaffold_5G00337950 Rroxscaffold_5G00358620 Rroxscaffold_5G00367500 Rroxscaffold_6G00401010 Rroxscaffold_6G00401040 Rroxscaffold_7G00179780 Rroxscaffold_7G00190410 Rroxscaffold_7G00190420 Rroxscaffold_7G00204930
rosa_rugosa	Rorug05G0490900.1 Rorug06G0116200
rosa_samantha	Rh1AG219300 Rh1BG343800 Rh1CG203800 Rh2BG515200 Rh2DG527300 Rh5CG412400 Rh6AG225900 Rh6AG229500 Rh6BG229900 Rh6BG240600 Rh6CG233100 Rh6DG224300 Rh7BG250000 Rh7CG511800 Rh7DG478500
rosa_wichuraiana	Rw6G007070 Rw6G019700 Rw6G020090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AccII	CGCG	1 cut(s)	35
AccIII	TCCGGA	4 cut(s)	26, 56, 239, 491
AciI	CCGC	6 cut(s)	4, 21, 38, 174, 208, 411
AcoI	YGGCCR	2 cut(s)	18, 110
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	155
AfeI	AGCGCT	1 cut(s)	529
AfiI	CCNNNNNNNGG	2 cut(s)	47, 147
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	367, 535
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	3 cut(s)	62, 119, 316
AluI	AGCT	3 cut(s)	62, 119, 316
Ama87I	CYCGRG	1 cut(s)	391
Aor13HI	TCCGGA	4 cut(s)	26, 56, 239, 491
Aor51HI	AGCGCT	1 cut(s)	529
AoxI	GGCC	4 cut(s)	18, 110, 149, 224
AspLEI	GCGC	3 cut(s)	35, 37, 530
AspS9I	GGNCC	2 cut(s)	149, 431
AsuHPI	GGTGA	2 cut(s)	118, 456
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	568
BccI	CCATC	3 cut(s)	94, 396, 551
BceAI	ACGGC	4 cut(s)	25, 136, 161, 176
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	1 cut(s)	512
BfaI	CTAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	90
BisI	GCNGC	3 cut(s)	21, 38, 174
BlsI	GCNGC	3 cut(s)	22, 39, 175
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	149, 431
BmiI	GGNNCC	3 cut(s)	55, 139, 150
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	20, 534
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
Bpu14I	TTCGAA	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	227, 454
BsaWI	WCCGGW	4 cut(s)	26, 56, 239, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 147
Bse118I	RCCGGY	1 cut(s)	112
BseAI	TCCGGA	4 cut(s)	26, 56, 239, 491
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	227, 454
BseGI	GGATG	2 cut(s)	35, 105
BseLI	CCNNNNNNNGG	2 cut(s)	47, 147
BseMII	CTCAG	1 cut(s)	267
BsePI	GCGCGC	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	443, 510
BseSI	GKGCMC	1 cut(s)	344
BseX3I	CGGCCG	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	4 cut(s)	20, 112, 151, 226
BsiEI	CGRYCG	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	6 cut(s)	17, 27, 57, 113, 240, 492
BsiWI	CGTACG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	47, 147
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	4 cut(s)	20, 112, 151, 226
BsoBI	CYCGRG	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp13I	TCCGGA	4 cut(s)	26, 56, 239, 491
BspACI	CCGC	6 cut(s)	4, 21, 38, 174, 208, 411
BspANI	GGCC	4 cut(s)	20, 112, 151, 226
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	4 cut(s)	26, 56, 239, 491
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	3 cut(s)	55, 139, 150
BspMI	ACCTGC	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	227, 454
BssHII	GCGCGC	1 cut(s)	33
BssNI	GRCGYC	1 cut(s)	254
BssSI	CACGAG	1 cut(s)	568
Bst2BI	CACGAG	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	35, 105
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	3 cut(s)	35, 37, 530
BstMCI	CGRYCG	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	1 cut(s)	35
BstZI	CGGCCG	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	20, 112, 151, 226
BtsCI	GGATG	2 cut(s)	35, 105
BtsI	GCAGTG	2 cut(s)	217, 522
BtsIMutI	CAGTG	2 cut(s)	217, 522
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	3 cut(s)	35, 37, 530
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	149, 431
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	130
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	276
EaeI	YGGCCR	2 cut(s)	18, 110
EagI	CGGCCG	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EclXI	CGGCCG	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	431
Eco47III	AGCGCT	1 cut(s)	529
Eco52I	CGGCCG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	510
FaeI	CATG	1 cut(s)	133
FaiI	YATR	4 cut(s)	131, 291, 336, 399
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	21, 38, 174
FokI	GGATG	2 cut(s)	42, 112
Fsp4HI	GCNGC	3 cut(s)	21, 38, 174
FspBI	CTAG	1 cut(s)	521
GlaI	GCGC	3 cut(s)	34, 36, 529
GluI	GCNGC	3 cut(s)	21, 38, 174
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	4 cut(s)	20, 112, 151, 226
HapII	CCGG	6 cut(s)	17, 27, 57, 113, 240, 492
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	3 cut(s)	35, 37, 530
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	3 cut(s)	33, 35, 528
HinP1I	GCGC	3 cut(s)	33, 35, 528
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HinfI	GANTC	3 cut(s)	123, 234, 566
HpaII	CCGG	6 cut(s)	17, 27, 57, 113, 240, 492
HphI	GGTGA	2 cut(s)	118, 456
Hpy166II	GTNNAC	5 cut(s)	273, 380, 416, 431, 464
Hpy188III	TCNNGA	7 cut(s)	27, 57, 240, 391, 424, 492, 570
Hpy8I	GTNNAC	5 cut(s)	273, 380, 416, 431, 464
HpyAV	CCTTC	2 cut(s)	61, 178
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	45, 547
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	301
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	3 cut(s)	33, 35, 528
Kpn2I	TCCGGA	4 cut(s)	26, 56, 239, 491
LmnI	GCTCC	1 cut(s)	59
LweI	GCATC	2 cut(s)	20, 534
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	337, 355
MfeI	CAATTG	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	1 cut(s)	349
MlyI	GAGTC	2 cut(s)	117, 560
MnlI	CCTC	8 cut(s)	67, 222, 236, 321, 457, 464, 488, 499
MroI	TCCGGA	4 cut(s)	26, 56, 239, 491
MspI	CCGG	6 cut(s)	17, 27, 57, 113, 240, 492
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	35
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	3 cut(s)	55, 139, 150
NmeAIII	GCCGAG	2 cut(s)	212, 252
NmuCI	GTSAC	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	65
PauI	GCGCGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	234
Pfl23II	CGTACG	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	22, 39, 175
PleI	GAGTC	2 cut(s)	117, 560
PpsI	GAGTC	2 cut(s)	117, 560
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	55, 139, 150
PspPI	GGNCC	2 cut(s)	149, 431
PteI	GCGCGC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SatI	GCNGC	3 cut(s)	21, 38, 174
Sau96I	GGNCC	2 cut(s)	149, 431
SchI	GAGTC	2 cut(s)	117, 560
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	9 cut(s)	64, 72, 84, 121, 247, 270, 304, 318, 449
SfaNI	GCATC	2 cut(s)	20, 534
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	431
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	6 cut(s)	4, 21, 38, 174, 208, 411
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	510
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	6 cut(s)	10, 65, 72, 121, 423, 472
TasI	AATT	1 cut(s)	349
TauI	GCSGC	3 cut(s)	23, 40, 176
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	2 cut(s)	217, 522
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	217, 522
VpaK11BI	GGWCC	1 cut(s)	431
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.