Rroxscaffold_2G00097210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001850
Physical Location & Seq
Forward (+)
18460018 .. 18468613
8596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097210.1

Sequence Viewer

Length: 738 bp
ATGGAAGAAAATCAAGCAAACCGTGGAGACTACTTCTGGTCCCAATGTTGGTGCCTCAACATCACAATCATATCGCCAGCCTCCCACTCAAAGCAAACGAATCCAAAGCTACGAGTGCTCAAAGAAAAGAAAACTGATAGTGACAACATCAATGGTAAGGGTGTCACCGCTTCATCACCGATATTTCCATGCTTGATCACCGAGCTAAGGTCTTTGGCCTGGCTTCTCCATCCTCTTGAGCACGAGGACTTCGGCGGAAGGAGAGAAAAATCGCTCCCAAAGTTCATAAGTCTTCAAGAGCGTGAAGAGCCTTCAAGCTGCCAAATAGCCGGTTCATCACCAACCTCAAGCCAAAGCACTTGTCACGTGTCAACACTCGTGGTCATCATACGACTCAAGATCAAGGGCCAATCGCCCTTGAATCAAGTATACCAACGAGGACAAACGACAAAGGAGGATGACAGACGAGAGGGACGCAAGCGGACGGAAGAAACCTCTCCAACGCTCGAAGTCTCCCAAGCTCGTGAAGAACCATCAAGCTGCCAAATAGCCGGTCTCCTCACCTCACCAACTTCGACAAACAAGGGAAATCACTTGCAAGCTCGAAGTTGTCAAACTCGCGGAAAATCAGCAAGCACAAAGCAAACGTGCCAGTTCATCCGCCATCAAAGCCATACTCGCCACGTGACACTTCTCGTGGTTCAAGTCCGATCAAGATCAAGCCTCTATGGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.46

Weight (kDa)

9.46

Isoelectric Point (pI)

70.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 429
AccII CGCG 1 cut(s) 621
AciI CCGC 5 cut(s) 168, 255, 481, 621, 661
AcvI CACGTG 2 cut(s) 367, 685
AfiI CCNNNNNNNGG 2 cut(s) 48, 207
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 4 cut(s) 296, 315, 421, 704
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 6 cut(s) 109, 205, 318, 521, 540, 602
AluI AGCT 6 cut(s) 109, 205, 318, 521, 540, 602
Alw21I GWGCWC 2 cut(s) 120, 243
Alw26I GTCTC 3 cut(s) 21, 517, 560
AoxI GGCC 3 cut(s) 216, 406, 730
ApeKI GCWGC 2 cut(s) 318, 540
ArsI GACNNNNNNTTYG 4 cut(s) 346, 378, 538, 570
AspS9I GGNCC 3 cut(s) 39, 406, 731
AsuHPI GGTGA 6 cut(s) 157, 168, 190, 330, 553, 558
AvaII GGWCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 51
BauI CACGAG 4 cut(s) 242, 377, 522, 695
BbrPI CACGTG 2 cut(s) 367, 685
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 120, 243
BbvI GCAGC 2 cut(s) 305, 527
BccI CCATC 3 cut(s) 237, 541, 672
BciT130I CCWGG 1 cut(s) 220
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 3 cut(s) 21, 517, 560
BglI GCCNNNNNGGC 1 cut(s) 729
BisI GCNGC 2 cut(s) 319, 541
BlsI GCNGC 2 cut(s) 320, 542
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 3 cut(s) 39, 406, 731
BmiI GGNNCC 2 cut(s) 41, 53
BmrFI CCNGG 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 3 cut(s) 257, 331, 380
BsaAI YACGTR 2 cut(s) 367, 685
BsaBI GATNNNNATC 1 cut(s) 715
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 207
Bse118I RCCGGY 2 cut(s) 329, 551
Bse1I ACTGG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 715
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 229, 463, 657
BseJI GATNNNNATC 1 cut(s) 715
BseLI CCNNNNNNNGG 2 cut(s) 48, 207
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 2 cut(s) 305, 527
Bsh1236I CGCG 1 cut(s) 621
BshFI GGCC 3 cut(s) 218, 408, 732
BshNI GGYRCC 1 cut(s) 51
BsiHKAI GWGCWC 2 cut(s) 120, 243
BsiSI CCGG 2 cut(s) 330, 552
BslFI GGGAC 2 cut(s) 25, 486
BslI CCNNNNNNNGG 2 cut(s) 48, 207
BsmAI GTCTC 3 cut(s) 21, 517, 560
BsmFI GGGAC 2 cut(s) 25, 486
BsnI GGCC 3 cut(s) 218, 408, 732
Bso31I GGTCTC 1 cut(s) 560
Bsp1286I GDGCHC 2 cut(s) 120, 243
Bsp143I GATC 4 cut(s) 195, 399, 710, 716
BspACI CCGC 5 cut(s) 168, 255, 481, 621, 661
BspANI GGCC 3 cut(s) 218, 408, 732
BspFNI CGCG 1 cut(s) 621
BspLI GGNNCC 2 cut(s) 41, 53
BspQI GCTCTTC 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 560
BsrFI RCCGGY 2 cut(s) 329, 551
BsrI ACTGG 1 cut(s) 652
BssAI RCCGGY 2 cut(s) 329, 551
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 4 cut(s) 195, 399, 710, 716
BssNAI GTATAC 1 cut(s) 430
BssSI CACGAG 4 cut(s) 242, 377, 522, 695
Bst1107I GTATAC 1 cut(s) 430
Bst2BI CACGAG 4 cut(s) 242, 377, 522, 695
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 300
BstBAI YACGTR 2 cut(s) 367, 685
BstC8I GCNNGC 4 cut(s) 78, 479, 600, 634
BstDEI CTNAG 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 3 cut(s) 229, 463, 657
BstFNI CGCG 1 cut(s) 621
BstKTI GATC 4 cut(s) 198, 402, 713, 719
BstMAI GTCTC 3 cut(s) 21, 517, 560
BstMBI GATC 4 cut(s) 195, 399, 710, 716
BstMWI GCNNNNNNNGC 5 cut(s) 115, 307, 669, 678, 729
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstUI CGCG 1 cut(s) 621
BstV1I GCAGC 2 cut(s) 305, 527
BstV2I GAAGAC 1 cut(s) 284
BstZ17I GTATAC 1 cut(s) 430
BsuRI GGCC 3 cut(s) 218, 408, 732
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 3 cut(s) 229, 463, 657
Cac8I GCNNGC 4 cut(s) 78, 479, 600, 634
Cfr10I RCCGGY 2 cut(s) 329, 551
Cfr13I GGNCC 3 cut(s) 39, 406, 731
CseI GACGC 1 cut(s) 483
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 1 cut(s) 189
DdeI CTNAG 1 cut(s) 206
DpnI GATC 4 cut(s) 197, 401, 712, 718
DpnII GATC 4 cut(s) 195, 399, 710, 716
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
EciI GGCGGA 2 cut(s) 270, 650
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 39
Eco72I CACGTG 2 cut(s) 367, 685
EcoRII CCWGG 1 cut(s) 218
FaeI CATG 1 cut(s) 192
FaiI YATR 7 cut(s) 71, 190, 287, 389, 430, 675, 729
FaqI GGGAC 2 cut(s) 25, 486
FatI CATG 1 cut(s) 188
FbaI TGATCA 1 cut(s) 195
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 319, 541
FokI GGATG 3 cut(s) 216, 470, 644
Fsp4HI GCNGC 2 cut(s) 319, 541
GluI GCNGC 2 cut(s) 319, 541
HaeIII GGCC 3 cut(s) 218, 408, 732
HapII CCGG 2 cut(s) 330, 552
HgaI GACGC 1 cut(s) 483
Hin1II CATG 1 cut(s) 192
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 3 cut(s) 100, 393, 421
HpaII CCGG 2 cut(s) 330, 552
HphI GGTGA 6 cut(s) 157, 168, 190, 330, 553, 558
Hpy166II GTNNAC 2 cut(s) 372, 430
Hpy188I TCNGA 1 cut(s) 710
Hpy188III TCNNGA 5 cut(s) 236, 296, 397, 524, 714
Hpy8I GTNNAC 2 cut(s) 372, 430
HpyAV CCTTC 2 cut(s) 252, 321
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 3 cut(s) 366, 647, 684
HpyCH4V TGCA 1 cut(s) 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 115, 307, 669, 678, 729
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 3 cut(s) 366, 647, 684
Hsp92II CATG 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 4 cut(s) 195, 399, 710, 716
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 7 cut(s) 22, 90, 205, 232, 343, 565, 665
Lsp1109I GCAGC 2 cut(s) 305, 527
MaeII ACGT 3 cut(s) 366, 647, 684
MaeIII GTNAC 4 cut(s) 140, 163, 362, 685
MalI GATC 4 cut(s) 197, 401, 712, 718
MboI GATC 4 cut(s) 195, 399, 710, 716
MboII GAAGA 5 cut(s) 17, 284, 317, 500, 539
MhlI GDGCHC 2 cut(s) 120, 243
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 524
MspI CCGG 2 cut(s) 330, 552
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 621
MwoI GCNNNNNNNGC 5 cut(s) 115, 307, 669, 678, 729
NdeII GATC 4 cut(s) 195, 399, 710, 716
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 2 cut(s) 41, 53
NmuCI GTSAC 4 cut(s) 140, 163, 362, 685
PciSI GCTCTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 100, 421
PkrI GCNGC 2 cut(s) 320, 542
PleI GAGTC 1 cut(s) 387
PmaCI CACGTG 2 cut(s) 367, 685
PmlI CACGTG 2 cut(s) 367, 685
PpsI GAGTC 1 cut(s) 387
Ppu21I YACGTR 2 cut(s) 367, 685
Psp6I CCWGG 1 cut(s) 218
PspCI CACGTG 2 cut(s) 367, 685
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 41, 53
PspPI GGNCC 3 cut(s) 39, 406, 731
SapI GCTCTTC 1 cut(s) 300
SatI GCNGC 2 cut(s) 319, 541
Sau3AI GATC 4 cut(s) 195, 399, 710, 716
Sau96I GGNCC 3 cut(s) 39, 406, 731
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 2 cut(s) 120, 243
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 3 cut(s) 236, 346, 395
SmoI CTYRAG 3 cut(s) 236, 346, 395
SsiI CCGC 5 cut(s) 168, 255, 481, 621, 661
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 3 cut(s) 369, 650, 687
TaqI TCGA 3 cut(s) 507, 575, 604
TfiI GAWTC 2 cut(s) 100, 421
TseFI GTSAC 4 cut(s) 140, 163, 362, 685
TseI GCWGC 2 cut(s) 318, 540
Tsp45I GTSAC 4 cut(s) 140, 163, 362, 685
TspDTI ATGAA 4 cut(s) 162, 274, 324, 646
TspGWI ACGGA 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.