Rw6G007070

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
11460362 .. 11461150
789 bp
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UTR
Exon/CDS
Intron
Rw6G007070.1

Sequence Viewer

Length: 426 bp
ATGGAGAGACAGTATTTCAAGGACAGGGCAGCACTTGAAGCCGAGTTTCAACAATCTTGTCTACCTCTGCACAATCAGATTTGTGATATCGTGAATACTGTTCCTTATTTTTGGCTCAAAGCTTTGACCAACAACAAAGTGCTACGTGCCAAGATAGAGCACGATGAACGAGCTCTTAAGTTTCTTATAGACATCAAGTGGTCTAAAACGGATAGGCAAAGGGGGTTTGGTTTCAAGCTTGAGTTCTTCTTTGACAGCAATCCTTTCTTTCGAAATCCTGTCTTAACGAAGACTTATGACATGATTGACAAAGATTTACCCATTTTAAGGAAAGCAATAGGGACTGAGATAGAATGGTATAGCAGAACACGTTTGACACCAAATCTCAATGAGAAGAGGCTTTATGAGGGCACTAACAATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

16.98

Weight (kDa)

9.1

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 32 - 133 5.4e-27 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 327
AflII CTTAAG 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 4 cut(s) 19, 38, 50, 235
AluBI AGCT 3 cut(s) 122, 173, 238
AluI AGCT 3 cut(s) 122, 173, 238
Alw21I GWGCWC 2 cut(s) 162, 175
ApeKI GCWGC 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 2 cut(s) 162, 175
BbvI GCAGC 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 146
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 336
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 53
BsiHKAI GWGCWC 2 cut(s) 162, 175
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 355
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 162, 175, 413
BspCNI CTCAG 1 cut(s) 337
BspT104I TTCGAA 1 cut(s) 271
BspTI CTTAAG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 12, 100
Bst6I CTCTTC 1 cut(s) 389
BstAFI CTTAAG 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 296
CviAII CATG 1 cut(s) 301
CviJI RGCY 6 cut(s) 41, 115, 122, 173, 238, 400
CviKI_1 RGCY 6 cut(s) 41, 115, 122, 173, 238, 400
DdeI CTNAG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco32I GATATC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 173
EcoRV GATATC 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 1 cut(s) 304
FaiI YATR 5 cut(s) 188, 297, 302, 360, 405
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 300
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 304
HindIII AAGCTT 2 cut(s) 120, 236
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 12, 100
HpyCH4IV ACGT 2 cut(s) 145, 370
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 145, 370
Hsp92II CATG 1 cut(s) 304
LpnPI CCDG 2 cut(s) 10, 291
Lsp1109I GCAGC 1 cut(s) 41
MaeII ACGT 2 cut(s) 145, 370
MboII GAAGA 3 cut(s) 238, 301, 406
MfeI CAATTG 1 cut(s) 418
MhlI GDGCHC 3 cut(s) 162, 175, 413
MluCI AATT 1 cut(s) 418
MnlI CCTC 3 cut(s) 75, 390, 400
MseI TTAA 3 cut(s) 177, 284, 326
MspCI CTTAAG 1 cut(s) 176
MunI CAATTG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 38
NlaIII CATG 1 cut(s) 304
NmeAIII GCCGAG 1 cut(s) 67
NspV TTCGAA 1 cut(s) 271
PkrI GCNGC 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 177, 284, 326
SatI GCNGC 1 cut(s) 30
SduI GDGCHC 3 cut(s) 162, 175, 413
SetI ASST 6 cut(s) 67, 124, 148, 175, 240, 373
SfuI TTCGAA 1 cut(s) 271
SmlI CTYRAG 2 cut(s) 176, 239
SmoI CTYRAG 2 cut(s) 176, 239
Sse9I AATT 1 cut(s) 418
SstI GAGCTC 1 cut(s) 175
TaaI ACNGT 2 cut(s) 12, 100
TaiI ACGT 2 cut(s) 148, 373
TaqI TCGA 1 cut(s) 271
TasI AATT 1 cut(s) 418
Tru1I TTAA 3 cut(s) 177, 284, 326
Tru9I TTAA 3 cut(s) 177, 284, 326
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.