Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001324

Physical Location & Seq

Genomic Coordinates Forward (+)

64578438 .. 64579386

Gene Structure 949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGAGCAGAGAAAGCAGAGGCGTCGTTGGATTCACTGATCGCCTGGTTCAACGGCCGGATCTCAGAGCTCCAAGAGCTCGTTATTGCACGAAACACCAGCAGCATCACCGATTTATCACCGGTCAACGCCGCCGTAAAGGACATGGAGCTTCAGGTTTTGCTCTTCACCTCCACTACCGGCTTCTGTAAAGCAGTAAGCAGCAGCTTCTCCGATGTCGAGTTTCATGCTGACCGCCAATCAGAACACAAATCCCAACAAGTCTCTGAACCTCCAAACGACTCCATTTCGAGCCTCAGCTTCAGCCCCAAAGCCAATCACCTTGTCACCACCTCCTGGGTCAACCAGGTTCGATGCTGGGAGATACAACACAGTGGACAAAATCTTGCTAGTATCCGAAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000972 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005829 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0031461 GO:0031967 GO:0031975 GO:0032182 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080008 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

WD40

Protein Analysis

136

Amino Acids

14.91

Weight (kDa)

5.31

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60660
fragaria_vesca	FvH4_7g11150 FvH4_7g11150 FvH4_7g11150 FvH4_7g11150
malus_domestica	MD02G1209900.v1.1
prunus_persica	Prupe.2G138600_v2.0.a1
pyrus_communis	pycom02g17150
rosa_chinensis	RchiOBHm_Chr1g0349231 RchiOBHm_Chr1g0349241 RchiOBHm_Chr5g0028911
rosa_laevigata	RLG00000009597 RLG00000028567 RLG00000028571 RLG00000028575 RLG00000028581 RLG00000028583 RLG00000028586 RLG00000028589 RLG00000028593 RLG00000028595 RLG00000028597 RLG00000030621
rosa_multiflora	Rmu_sc0000827.1_g000037 Rmu_sc0002914.1_g000030 Rmu_sc0003385.1_g000016 Rmu_sc0003385.1_g000026 Rmu_sc0006415.1_g000020 Rmu_sc0016526.1_g000001 Rmu_ssc0000150.1_g000012
rosa_roxburghii	Rroxscaffold_4G00305770 Rroxscaffold_4G00305780 Rroxscaffold_4G00305890 Rroxscaffold_4G00305910 Rroxscaffold_4G00305970 Rroxscaffold_4G00306010 Rroxscaffold_4G00306040
rosa_rugosa	Rorug01G0201500 Rorug01G0201900 Rorug05G0111400 Rorug05G0239700
rosa_samantha	Rh1AG218700 Rh1AG219100 Rh1AG219600 Rh1CG203200 Rh1CG204600 Rh1CG204800 Rh3AG070800 Rh5AG203700 Rh5BG202000
rosa_wichuraiana	Rw0G019560 Rw1G018600 Rw1G018630 Rw5G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	336
AciI	CCGC	2 cut(s)	132, 235
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	2 cut(s)	137, 286
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgeI	ACCGGT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	44, 335, 345
AluBI	AGCT	5 cut(s)	70, 79, 151, 207, 300
AluI	AGCT	5 cut(s)	70, 79, 151, 207, 300
Alw21I	GWGCWC	2 cut(s)	72, 81
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	3 cut(s)	102, 201, 204
AsiGI	ACCGGT	1 cut(s)	121
AsuHPI	GGTGA	5 cut(s)	100, 111, 160, 311, 319
BanII	GRGCYC	2 cut(s)	72, 81
Bbv12I	GWGCWC	2 cut(s)	72, 81
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	3 cut(s)	114, 213, 216
BceAI	ACGGC	2 cut(s)	70, 119
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 209, 243
BciT130I	CCWGG	3 cut(s)	46, 337, 347
BciVI	GTATCC	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	404
BisI	GCNGC	4 cut(s)	103, 132, 202, 205
BlsI	GCNGC	4 cut(s)	104, 133, 203, 206
Bme1390I	CCNGG	3 cut(s)	46, 337, 347
BmrFI	CCNGG	3 cut(s)	46, 337, 347
BmsI	GCATC	2 cut(s)	114, 344
Bpu10I	CCTNAGC	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse118I	RCCGGY	2 cut(s)	121, 179
BseBI	CCWGG	3 cut(s)	46, 337, 347
BseDI	CCNNGG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	78, 310
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	114, 213, 216
BseYI	CCCAGC	1 cut(s)	357
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BshTI	ACCGGT	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	72, 81
BsiSI	CCGG	3 cut(s)	58, 122, 180
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	72, 81
Bsp143I	GATC	2 cut(s)	39, 60
BspACI	CCGC	2 cut(s)	132, 235
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	77, 309
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	121, 179
BssAI	RCCGGY	2 cut(s)	121, 179
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	39, 60
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	3 cut(s)	46, 337, 347
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	64, 296
BstKTI	GATC	2 cut(s)	42, 63
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	2 cut(s)	39, 60
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 76
BstNI	CCWGG	3 cut(s)	46, 337, 347
BstSCI	CCNGG	3 cut(s)	44, 335, 345
BstV1I	GCAGC	3 cut(s)	114, 213, 216
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZI	CGGCCG	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	35, 379
Cfr10I	RCCGGY	2 cut(s)	121, 179
CseI	GACGC	1 cut(s)	12
CsiI	ACCWGGT	1 cut(s)	345
CspAI	ACCGGT	1 cut(s)	121
CviAII	CATG	2 cut(s)	145, 227
DdeI	CTNAG	2 cut(s)	64, 296
DpnI	GATC	2 cut(s)	41, 62
DpnII	GATC	2 cut(s)	39, 60
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	2 cut(s)	70, 79
EclXI	CGGCCG	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	72, 81
Eco52I	CGGCCG	1 cut(s)	55
Eco53kI	GAGCTC	2 cut(s)	70, 79
Eco57I	CTGAAG	2 cut(s)	137, 286
EcoICRI	GAGCTC	2 cut(s)	70, 79
EcoRII	CCWGG	3 cut(s)	44, 335, 345
EcoT38I	GRGCYC	2 cut(s)	72, 81
FaeI	CATG	2 cut(s)	148, 230
FaiI	YATR	2 cut(s)	146, 228
FatI	CATG	2 cut(s)	144, 226
Fnu4HI	GCNGC	4 cut(s)	103, 132, 202, 205
FriOI	GRGCYC	2 cut(s)	72, 81
Fsp4HI	GCNGC	4 cut(s)	103, 132, 202, 205
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	4 cut(s)	103, 132, 202, 205
GsaI	CCCAGC	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	3 cut(s)	58, 122, 180
HgaI	GACGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	148, 230
HincII	GTYRAC	2 cut(s)	127, 343
HindII	GTYRAC	2 cut(s)	127, 343
HinfI	GANTC	2 cut(s)	32, 281
HpaII	CCGG	3 cut(s)	58, 122, 180
HphI	GGTGA	5 cut(s)	100, 111, 160, 311, 319
Hpy166II	GTNNAC	3 cut(s)	127, 343, 377
Hpy188I	TCNGA	5 cut(s)	67, 214, 244, 268, 398
Hpy8I	GTNNAC	3 cut(s)	127, 343, 377
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 76
HpyF3I	CTNAG	2 cut(s)	64, 296
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	148, 230
Kzo9I	GATC	2 cut(s)	39, 60
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	3 cut(s)	5, 75, 148
Lsp1109I	GCAGC	3 cut(s)	114, 213, 216
LweI	GCATC	2 cut(s)	114, 344
MabI	ACCWGGT	1 cut(s)	345
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	41, 62
MboI	GATC	2 cut(s)	39, 60
MboII	GAAGA	1 cut(s)	157
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	72, 81
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	5 cut(s)	13, 181, 282, 305, 343
MspI	CCGG	3 cut(s)	58, 122, 180
MspR9I	CCNGG	3 cut(s)	46, 337, 347
MvaI	CCWGG	3 cut(s)	46, 337, 347
MwoI	GCNNNNNNNGC	2 cut(s)	14, 76
NdeII	GATC	2 cut(s)	39, 60
NlaIII	CATG	2 cut(s)	148, 230
NmuCI	GTSAC	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	336
PinAI	ACCGGT	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	104, 133, 203, 206
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp124BI	GAGCTC	2 cut(s)	72, 81
Psp6I	CCWGG	3 cut(s)	44, 335, 345
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	3 cut(s)	44, 335, 345
PsuI	RGATCY	1 cut(s)	60
SacI	GAGCTC	2 cut(s)	72, 81
SapI	GCTCTTC	1 cut(s)	170
SatI	GCNGC	4 cut(s)	103, 132, 202, 205
Sau3AI	GATC	2 cut(s)	39, 60
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	3 cut(s)	46, 337, 347
SduI	GDGCHC	2 cut(s)	72, 81
SexAI	ACCWGGT	1 cut(s)	345
SfaNI	GCATC	2 cut(s)	114, 344
SsiI	CCGC	2 cut(s)	132, 235
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	2 cut(s)	72, 81
StyD4I	CCNGG	3 cut(s)	44, 335, 345
TaaI	ACNGT	1 cut(s)	374
TaqI	TCGA	3 cut(s)	219, 290, 352
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	32
TscAI	CASTG	2 cut(s)	42, 379
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	102, 201, 204
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	215
TspRI	CASTG	2 cut(s)	42, 379
Van91I	CCANNNNNTGG	1 cut(s)	336
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.