Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000827.1

Orthogroup ID

OG0001324

Physical Location & Seq

Genomic Coordinates Reverse (-)

165182 .. 167056

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000827.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggaggctgagaaagaaggggcatcgttggactcgctgatcgccgggttcaacagttggatctcggagctccaagagctcgttattgggcgcaacatgtacccggccagcagcgtcacagatttgacagccgtcgacgccgccgtgaaggccatggagcttcaggtccaggccatcaacaaccggaaactgatcgatgcatcgctgaagcagcaaaggaaattgaaggatatgtcaatttatgcccccactcatgttcctgaaagaatgtcgatgttgaatttggatacaaatagatgtttatttccagaaagctctcagcagcaaaacactggttctgggaccttcaagcttgaggaggatcctgcaccaccaccaccacccaaggagaaaagggggcgttccatgccaccattgtggtttgtaagtgctgaagagctggattccttgtcatcatacatgagaggaaggcttacactagagaaggtcaatgcagctattagtgacatggcaacatatgctgaagcaaattatcagctcatagctgctccaaagaagaatgtttgtgttctgatttttggtttgtacatctttggcacaggtctgattttggttatcaatgatcaatgggaaaaagccttggtaagtgaattaaatcaggttattgggtctgttctcaggtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SKA1

Protein Analysis

228

Amino Acids

25.24

Weight (kDa)

5.21

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60660
fragaria_vesca	FvH4_7g11150 FvH4_7g11150 FvH4_7g11150 FvH4_7g11150
malus_domestica	MD02G1209900.v1.1
prunus_persica	Prupe.2G138600_v2.0.a1
pyrus_communis	pycom02g17150
rosa_chinensis	RchiOBHm_Chr1g0349231 RchiOBHm_Chr1g0349241 RchiOBHm_Chr5g0028911
rosa_laevigata	RLG00000009597 RLG00000028567 RLG00000028571 RLG00000028575 RLG00000028581 RLG00000028583 RLG00000028586 RLG00000028589 RLG00000028593 RLG00000028595 RLG00000028597 RLG00000030621
rosa_multiflora	Rmu_sc0000827.1_g000037 Rmu_sc0002914.1_g000030 Rmu_sc0003385.1_g000016 Rmu_sc0003385.1_g000026 Rmu_sc0006415.1_g000020 Rmu_sc0016526.1_g000001 Rmu_ssc0000150.1_g000012
rosa_roxburghii	Rroxscaffold_4G00305770 Rroxscaffold_4G00305780 Rroxscaffold_4G00305890 Rroxscaffold_4G00305910 Rroxscaffold_4G00305970 Rroxscaffold_4G00306010 Rroxscaffold_4G00306040
rosa_rugosa	Rorug01G0201500 Rorug01G0201900 Rorug05G0111400 Rorug05G0239700
rosa_samantha	Rh1AG218700 Rh1AG219100 Rh1AG219600 Rh1CG203200 Rh1CG204600 Rh1CG204800 Rh3AG070800 Rh5AG203700 Rh5BG202000
rosa_wichuraiana	Rw0G019560 Rw1G018600 Rw1G018630 Rw5G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	68, 356, 369
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	4 cut(s)	146, 227, 453, 543
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	101, 587
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	52, 226, 280, 349
AjnI	CCWGG	1 cut(s)	168
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	9 cut(s)	70, 79, 160, 315, 352, 439, 497, 538, 545
AluI	AGCT	9 cut(s)	70, 79, 160, 315, 352, 439, 497, 538, 545
Alw21I	GWGCWC	2 cut(s)	72, 81
AlwI	GGATC	3 cut(s)	68, 356, 369
AlwNI	CAGNNNCTG	1 cut(s)	684
AoxI	GGCC	3 cut(s)	105, 150, 171
ApeKI	GCWGC	5 cut(s)	111, 211, 322, 494, 545
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	3 cut(s)	166, 342, 681
AsuC2I	CCSGG	2 cut(s)	46, 104
AvaII	GGWCC	3 cut(s)	166, 342, 681
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	72, 81
Bbv12I	GWGCWC	2 cut(s)	72, 81
BbvI	GCAGC	5 cut(s)	123, 223, 334, 506, 532
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	116, 128
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	280
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	2 cut(s)	46, 104
BfaI	CTAG	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	6 cut(s)	112, 141, 212, 323, 495, 546
BlsI	GCNGC	6 cut(s)	113, 142, 213, 324, 496, 547
Bme1390I	CCNGG	3 cut(s)	46, 104, 170
Bme18I	GGWCC	3 cut(s)	166, 342, 681
BmgT120I	GGNCC	3 cut(s)	166, 342, 681
BmiI	GGNNCC	2 cut(s)	343, 363
BmrFI	CCNGG	3 cut(s)	46, 104, 170
BmsI	GCATC	3 cut(s)	32, 187, 209
BoxI	GACNNNNGTC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	2 cut(s)	46, 104
Bsa29I	ATCGAT	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	153, 384, 639
BsaWI	WCCGGW	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	170
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	153, 384, 639
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	5 cut(s)	123, 223, 334, 506, 532
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	107, 152, 173
BshVI	ATCGAT	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	72, 81
BsiSI	CCGG	3 cut(s)	45, 104, 184
BslFI	GGGAC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	107, 152, 173
Bsp1286I	GDGCHC	2 cut(s)	72, 81
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	5 cut(s)	39, 60, 192, 361, 622
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	3 cut(s)	107, 152, 173
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	343, 363
BspPI	GGATC	3 cut(s)	68, 356, 369
BspQI	GCTCTTC	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	3 cut(s)	153, 384, 639
BssMI	GATC	5 cut(s)	39, 60, 192, 361, 622
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	153, 384, 639
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	585
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	9, 318, 677
BstDSI	CCRYGG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	5 cut(s)	42, 63, 195, 364, 625
BstMBI	GATC	5 cut(s)	39, 60, 192, 361, 622
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 137, 149, 211, 406, 518
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	100
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSCI	CCNGG	3 cut(s)	44, 102, 168
BstV1I	GCAGC	5 cut(s)	123, 223, 334, 506, 532
BstX2I	RGATCY	2 cut(s)	60, 361
BstXI	CCANNNNNNTGG	1 cut(s)	417
BstYI	RGATCY	2 cut(s)	60, 361
Bsu15I	ATCGAT	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	3 cut(s)	107, 152, 173
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	684
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	3 cut(s)	166, 342, 681
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	2 cut(s)	103, 146
Csp6I	GTAC	2 cut(s)	100, 586
CviAII	CATG	6 cut(s)	97, 154, 254, 406, 460, 508
CviQI	GTAC	2 cut(s)	100, 586
DdeI	CTNAG	3 cut(s)	9, 318, 677
DpnI	GATC	5 cut(s)	41, 62, 194, 363, 624
DpnII	GATC	5 cut(s)	39, 60, 192, 361, 622
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Ecl136II	GAGCTC	2 cut(s)	70, 79
Eco130I	CCWWGG	3 cut(s)	153, 384, 639
Eco24I	GRGCYC	2 cut(s)	72, 81
Eco47I	GGWCC	3 cut(s)	166, 342, 681
Eco53kI	GAGCTC	2 cut(s)	70, 79
Eco57I	CTGAAG	4 cut(s)	146, 227, 453, 543
EcoICRI	GAGCTC	2 cut(s)	70, 79
EcoO109I	RGGNCCY	2 cut(s)	342, 681
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	3 cut(s)	153, 384, 639
EcoT22I	ATGCAT	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	72, 81
ErhI	CCWWGG	3 cut(s)	153, 384, 639
FaeI	CATG	6 cut(s)	100, 157, 257, 409, 463, 511
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	6 cut(s)	96, 153, 253, 405, 459, 507
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	6 cut(s)	112, 141, 212, 323, 495, 546
FriOI	GRGCYC	2 cut(s)	72, 81
Fsp4HI	GCNGC	6 cut(s)	112, 141, 212, 323, 495, 546
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	6 cut(s)	112, 141, 212, 323, 495, 546
HaeIII	GGCC	3 cut(s)	107, 152, 173
HapII	CCGG	3 cut(s)	45, 104, 184
HgaI	GACGC	2 cut(s)	103, 146
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	6 cut(s)	100, 157, 257, 409, 463, 511
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	2 cut(s)	32, 443
HpaII	CCGG	3 cut(s)	45, 104, 184
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	67, 573, 606
Hpy188III	TCNNGA	3 cut(s)	260, 308, 684
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	2 cut(s)	137, 140
HpyAV	CCTTC	6 cut(s)	11, 142, 220, 355, 462, 478
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	200, 368, 494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 137, 149, 211, 406, 518
HpyF3I	CTNAG	3 cut(s)	9, 318, 677
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	100, 157, 257, 409, 463, 511
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	39, 60, 192, 361, 622
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	4 cut(s)	67, 75, 157, 553
Lsp1109I	GCAGC	5 cut(s)	123, 223, 334, 506, 532
LweI	GCATC	3 cut(s)	32, 187, 209
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	115, 503
MalI	GATC	5 cut(s)	41, 62, 194, 363, 624
MboI	GATC	5 cut(s)	39, 60, 192, 361, 622
MboII	GAAGA	2 cut(s)	446, 568
MflI	RGATCY	2 cut(s)	60, 361
MhlI	GDGCHC	2 cut(s)	72, 81
MluCI	AATT	5 cut(s)	221, 237, 280, 529, 650
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	9, 38
MnlI	CCTC	3 cut(s)	349, 352, 458
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	1 cut(s)	415
MspI	CCGG	3 cut(s)	45, 104, 184
MspR9I	CCNGG	3 cut(s)	46, 104, 170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	6 cut(s)	76, 137, 149, 211, 406, 518
NciI	CCSGG	2 cut(s)	46, 104
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	5 cut(s)	39, 60, 192, 361, 622
NlaIII	CATG	6 cut(s)	100, 157, 257, 409, 463, 511
NlaIV	GGNNCC	2 cut(s)	343, 363
NmuCI	GTSAC	2 cut(s)	115, 503
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	415
PciI	ACATGT	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	6 cut(s)	113, 142, 213, 324, 496, 547
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	2 cut(s)	342, 681
PscI	ACATGT	1 cut(s)	96
PshAI	GACNNNNGTC	1 cut(s)	131
Psp124BI	GAGCTC	2 cut(s)	72, 81
Psp5II	RGGWCCY	2 cut(s)	342, 681
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	343, 363
PspPI	GGNCC	3 cut(s)	166, 342, 681
PspPPI	RGGWCCY	2 cut(s)	342, 681
PstNI	CAGNNNCTG	1 cut(s)	684
PsuI	RGATCY	2 cut(s)	60, 361
RsaI	GTAC	2 cut(s)	101, 587
RsaNI	GTAC	2 cut(s)	100, 586
RseI	CAYNNNNRTG	1 cut(s)	415
SacI	GAGCTC	2 cut(s)	72, 81
SalI	GTCGAC	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	6 cut(s)	112, 141, 212, 323, 495, 546
Sau3AI	GATC	5 cut(s)	39, 60, 192, 361, 622
Sau96I	GGNCC	3 cut(s)	166, 342, 681
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	3 cut(s)	46, 104, 170
SduI	GDGCHC	2 cut(s)	72, 81
SfaNI	GCATC	3 cut(s)	32, 187, 209
SgrDI	CGTCGACG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	166, 342, 681
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	5 cut(s)	221, 237, 280, 529, 650
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	2 cut(s)	72, 81
StyD4I	CCNGG	3 cut(s)	44, 102, 168
StyI	CCWWGG	3 cut(s)	153, 384, 639
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	135, 195, 272
TasI	AATT	5 cut(s)	221, 237, 280, 529, 650
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	115, 503
TseI	GCWGC	5 cut(s)	111, 211, 322, 494, 545
Tsp45I	GTSAC	2 cut(s)	115, 503
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	3 cut(s)	166, 342, 681
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	479
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.